Detail information of GWHGAAEX017825/evm.TU.scaffold_88.3
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 3.00E-160 | FOG: PPR repeat |
| nr | gi|672127830|ref|XP_008787393.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At1g06140, mitochondrial [Phoenix dactylifera] |
| Swissprot | tr|Q9LND4|PPR14_ARATH | 8.00E-161 | Pentatricopeptide repeat-containing protein At1g06140, mitochondrial (Precursor) |
| trEMBL | tr|D7SNR0|D7SNR0_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CBI17289.3} |
| TAIR | AT1G06140 | 3.00E-160 | Pentatricopeptide repeat (PPR) superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000095 | 43561 | 46377 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX017825
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 142 | 162 | 0.86 |
| PF01535.19 | PPR | 243 | 269 | 0.0047 |
| PF01535.19 | PPR | 271 | 299 | 0.0056 |
| PF13041.5 | PPR_2 | 369 | 417 | 5.10E-11 |
| PF01535.19 | PPR | 444 | 468 | 0.0094 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 1.590 |
| SRR2545915 | Juvenile tuber | 1.190 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 2.160 |
| SRR5643514 | five period of Gastrodia elata | 2.250 | |
| SRR5643515 | five period of Gastrodia elata | 1.860 | |
| SRR5643524 | five period of Gastrodia elata | 2.090 | |
| SRR5643525 | five period of Gastrodia elata | 1.050 | |
| SRR5643528 | five period of Gastrodia elata | 1.170 | |
| SRR5643658 | five period of Gastrodia elata | 1.370 | |
| SRR5643659 | five period of Gastrodia elata | 1.840 | |
| SRR5643660 | five period of Gastrodia elata | 2.500 | |
| SRR5643661 | five period of Gastrodia elata | 2.720 | |
| SRR5643662 | five period of Gastrodia elata | 3.090 | |
| SRR5643663 | five period of Gastrodia elata | 2.450 | |
| SRR5643664 | five period of Gastrodia elata | 2.450 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 1.790 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 2.580 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 2.210 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 1.870 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 1.840 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.860 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 1.890 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 1.470 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 3.950 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 2.100 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 3.110 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 3.110 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 3.36 |
| Juven | Juvenile tuber | 2.47 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.59 | |
| Mother_Juven | Mother tuber of Juvenile | 0.59 |