Detail information of GWHGAAEX017827/evm.TU.scaffold_88.9


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|383452680|ref|YP_005366669.1|6.00E-85peptidyl-prolyl cis-trans isomerase [Corallococcus coralloides DSM 2259]
KOGKOG08653.00E-98Cyclophilin type peptidyl-prolyl cis-trans isomerase
nrgi|743853200|ref|XP_010940596.1|1.45E-105PREDICTED: peptidyl-prolyl cis-trans isomerase CYP19-3 [Elaeis guineensis]
Swissprottr|Q38867|CP19C_ARATH1.00E-98Peptidyl-prolyl cis-trans isomerase CYP19-3
trEMBLtr|A0A061F2Q5|A0A061F2Q5_THECC7.00E-106Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU000493}
TAIRAT3G560703.00E-98rotamase cyclophilin 2

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000009597800115106+
Transcript Sequence

Network for GWHGAAEX017827

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00160.20Pro_isomerase141695.70E-46
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006457Biological Processprotein folding
GO:0000413Biological Processprotein peptidyl-prolyl isomerization
GO:0003755Molecular Functionpeptidyl-prolyl cis-trans isomerase activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms92.710
SRR2545915Juvenile tuber88.250
SRP108465SRR5643513five period of Gastrodia elata90.140
SRR5643514five period of Gastrodia elata76.110
SRR5643515five period of Gastrodia elata82.450
SRR5643524five period of Gastrodia elata72.200
SRR5643525five period of Gastrodia elata63.000
SRR5643528five period of Gastrodia elata68.250
SRR5643658five period of Gastrodia elata50.370
SRR5643659five period of Gastrodia elata110.630
SRR5643660five period of Gastrodia elata111.710
SRR5643661five period of Gastrodia elata112.930
SRR5643662five period of Gastrodia elata143.280
SRR5643663five period of Gastrodia elata103.970
SRR5643664five period of Gastrodia elata125.640
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_197.360
SRR6049655Rhizomagastrodiae_C368-T10_good_1109.520
SRR6049656Rhizomagastrodiae_C368-T07_good_192.270
SRR6049657Rhizomagastrodiae_C368-T07_good_197.250
SRR6049658Rhizomagastrodiae_C368-T04_good_174.290
SRR6049659Rhizomagastrodiae_C368-T04_good_166.770
SRR6049660Rhizomagastrodiae_C368-T01_good_180.350
SRR6049661Rhizomagastrodiae_C368-T04_good_174.150
SRR6049662Rhizomagastrodiae_C368-T01_good_192.010
SRR6049663Rhizomagastrodiae_C368-T01_good_179.880
SRR6049664Rhizomagastrodiae_C368-T10_good_1104.710
SRR6049665Rhizomagastrodiae_C368-T10_good_1104.710
SRP279888GastroGastrodia elata tuber 151.66
JuvenJuvenile tuber133.70
Mother_GastroMother tuber of Gastrodia elata 89.51
Mother_JuvenMother tuber of Juvenile 98.20