Gene detail

Detail information of GWHGAAEX017838/evm.TU.scaffold_88.20

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|186686180\|ref\|YP_001869376.1\|	2.00E-15	hypothetical protein Npun_F6147 [Nostoc punctiforme PCC 73102]
KOG	KOG0266	1.00E-64	WD40 repeat-containing protein
nr	gi\|695004136\|ref\|XP_009388467.1\|	0	PREDICTED: WD repeat-containing protein 13 [Musa acuminata subsp. malaccensis]
Swissprot	tr\|Q6S7B0\|TAF5_ARATH	3.00E-07	Transcription initiation factor TFIID subunit 5
trEMBL	tr\|M0S8V5\|M0S8V5_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr2P17640_001}
TAIR	HS16445426	1.00E-64	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000095	490234	508095	-

Transcript Sequence
>GWHTAAEX017838 ATTTTTAGTGCCTGCCTTTGCCCGGCGAGCCCGTTTGGAGCTCCGACATTTAATTTACCCTTTTTTTCAGTTGGTTAGTTGATTGTAGAGATTGCATCTTGCTCCCAGCATCTCCAAATTTCTATATTAGAACGTCGGAGGAGGAATCCATGGATGGCCTTCTTCCCCCACGGCTTCTCGCTGTCCTCGTTCTCCTCCATCGCAGGAGAAGGCTACAGGTAGGGCGAGCGCTGCAACCACCGCTATCAAGTAATGGAGGAGATCGGCGGCGGAGCAGTGGTGTTGGAGGAAACAGTATCATCGTCTCCAGCGATGGAACTGGTATTCGTGAGCTGTTTGCTCCAGCCTCCCATAACTCACAACGATCCCAAGTACGTTTCGATCCGTCGCCTTCTCCTCCACCGCAAGGCTCACTCACTCCCCCAACGCAAGGACTGGCGATGCAATGAGAGAGGCTATGCTGCTTATAGAAATTTCATCCGGAGGCCAAGGAATTGGGAAAGTTTAATGGCACAAAGTTCGCTAAGCTCACCAAACCACAGCGGGCATTGGGCTTCATCTCAAGGACCCCAATCCCTTTTGTTTGACACAGAGAGCCAAAGTTCAAGCCGGGACTTGAGAGGTTTCAATCTATCATTTGGCCACCGTTCAAGTTTCAGTTCAACTGATGCGGAACACCAGTTTCGGCCTGTTGAGCCAGCATATTCATTTGTTGGGATGCATTGCATCTTTGACAGTTGTAAAGTTTCAGTTACCATCTTAAAATTTGGGCACATGAGCTCAGATTTGCTCGCATATGGTGCATCAGATGGAAGCTTGACTGTTTGCCATGTGTTAGAACCACCTTCAATAATTCAACATCTGAAAGGACATTCAAAAGCCATCACAGATTTTGATTTTTCATCAAATAATCAGTACATCGCCTCATCATCTGTGGACAAAACTGTCCGAGTCTGGGAGATTTCTAAAGGCCTTTGCATTCGAGTCATATATGGAACATCTTCTCAATTATGCATACGGTTTCACCCGGTAAACAACAACTTGCTTTCAGTTGGCAATGCAAATAAAGAAATCAGTATGATCAATTTCAGCACTGGCCGAGTTATTAAAAAGGTTTACTTTGAGAAGGAGATGACAGCTATGGACAATGATCACACTGGGCAACTTATTTTCTCAGGAGATGCCCAGGGATGCATATACTCTGTTAGTGTGAACTCCCACACAGGATCCATATCCAGGTCGCATAAAAATAGGAGCATGAGGAGCAAATCTCCAATCACTACGGTTCAGTACCGCACATTTTCTTTGGTTGCGCGGTGCCCTGTGCTTCTCGTGTGCGCTCAAGATGGCAGTCTTTGCTTCTTCAGCGTGGCGTTGGAGATACAAGGCTATCTCACTCTCTTGTGCTCACTCAAGCTCTCTCCCAGGCTGCACAACAACAGGGCTTCCTTCTGCCCTCTTCTTTCTCTTGAAAAAGGCGAATTCATAGTTGCTGGCAGCGAGGATTCAAACGTATACTTTTATGATCTGACGCGCCCGAAGCACGCCTGTGTGAACAAGCTGCAGGGACATGGATCTCCTGTGATAGGGGTTGCGTGGAATTATGGGGAGACTCTTTTGGCTTCTTCTGATTCAAAAGGCACTGTGATTGTTTGGAAGAGAGCCTAGTCCAGCTAAATTTTTAAGGGCTTTTACTCCCACGTGTCACACTGTCATTGGTGCGTTGCAATTTTTATTAAGAGGCCCCCCTGCCAAGTTTCTGTATCGTTGTATTTTGGATGGATTATGCATCCTTATATTGTATTGTTAACACTTTTTTTTAGTACTATTGCTAAAATGCCCTAAAAAAATTTCCTAAAACATCCTAAACCTTAACCTTACCATGGTTGGTCCGACGGGTTCTGCTTAAAAATTACAGGATTTGGTCCTTCGGGTTTTGCGGGTAGGATCCAGGCAGGTTCTCGAGATCGGATTAAGATGAAATTTTGGGAGTCTTAAAGCAGTTTAGAAGAACTCTAAACATAGAGATTATGCGCACATTAGTTCACCCTTGCCAACAATTGGAGCTAAATTTGTGGATTATTCAAATATTTCTTATTATTATGTATCGATGATACAAGAGAATTGAAATATTATTTATTTAGTCTTAAAATGCATGCTAAATTCATTTATTTAGTCTTATAATGCATGCTAAAGTCTCT

Network for GWHGAAEX017838

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.31	WD40	201	235	2.90E-09
PF00400.31	WD40	433	469	0.0013

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	29.120
SRP064423	SRR2545915	Juvenile tuber	20.300
SRP108465	SRR5643513	five period of Gastrodia elata	8.780
	SRR5643514	five period of Gastrodia elata	7.230
	SRR5643515	five period of Gastrodia elata	6.600
	SRR5643524	five period of Gastrodia elata	7.880
	SRR5643525	five period of Gastrodia elata	13.200
	SRR5643528	five period of Gastrodia elata	9.600
	SRR5643658	five period of Gastrodia elata	15.170
	SRR5643659	five period of Gastrodia elata	11.220
	SRR5643660	five period of Gastrodia elata	13.550
	SRR5643661	five period of Gastrodia elata	11.280
	SRR5643662	five period of Gastrodia elata	16.630
	SRR5643663	five period of Gastrodia elata	13.510
	SRR5643664	five period of Gastrodia elata	16.940
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	12.340
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	11.690
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	12.050
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	16.020
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	18.970
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	20.970
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	14.950
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	17.920
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	10.700
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	13.140
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	10.830
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	10.830
SRP279888	Gastro	Gastrodia elata tuber	17.15
	Juven	Juvenile tuber	12.69
	Mother_Gastro	Mother tuber of Gastrodia elata	9.61
	Mother_Juven	Mother tuber of Juvenile	10.05