Detail information of GWHGAAEX017839/evm.TU.scaffold_88.21
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG0773 | 9.00E-32 | Transcription factor MEIS1 and related HOX domain proteins |
| nr | gi|743818965|ref|XP_010931387.1| | 9.93E-35 | PREDICTED: pathogenesis-related genes transcriptional activator PTI6-like [Elaeis guineensis] |
| Swissprot | tr|P48000|KNAT3_ARATH | 3.00E-32 | Homeobox protein knotted-1-like 3 |
| trEMBL | tr|M0TRY8|M0TRY8_MUSAM | 3.00E-34 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr8P19850_001} |
| TAIR | AT5G25220 | 9.00E-32 | KNOTTED1-like homeobox gene 3 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000095 | 509557 | 518313 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX017839
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00847.19 | AP2 | 117 | 167 | 5.30E-12 |
| PF05920.10 | Homeobox_KN | 280 | 319 | 6.90E-13 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | AP2/ERF-ERF |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 48.240 |
| SRR2545915 | Juvenile tuber | 42.800 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 36.250 |
| SRR5643514 | five period of Gastrodia elata | 40.010 | |
| SRR5643515 | five period of Gastrodia elata | 34.350 | |
| SRR5643524 | five period of Gastrodia elata | 38.660 | |
| SRR5643525 | five period of Gastrodia elata | 53.710 | |
| SRR5643528 | five period of Gastrodia elata | 55.540 | |
| SRR5643658 | five period of Gastrodia elata | 62.370 | |
| SRR5643659 | five period of Gastrodia elata | 35.430 | |
| SRR5643660 | five period of Gastrodia elata | 37.010 | |
| SRR5643661 | five period of Gastrodia elata | 32.910 | |
| SRR5643662 | five period of Gastrodia elata | 42.820 | |
| SRR5643663 | five period of Gastrodia elata | 40.990 | |
| SRR5643664 | five period of Gastrodia elata | 45.490 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 48.040 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 32.560 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 39.030 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 56.640 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 52.170 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 63.080 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 48.220 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 43.800 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 34.240 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 37.490 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 34.610 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 34.610 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 54.66 |
| Juven | Juvenile tuber | 47.79 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 58.70 | |
| Mother_Juven | Mother tuber of Juvenile | 56.45 |