Detail information of GWHGAAEX017845/evm.TU.scaffold_88.27
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|255767775|ref|NP_391464.2| | 5.00E-63 | metabolite transport protein YwtG [Bacillus subtilis subsp. subtilis str. 168] |
| KOG | KOG0254 | 0 | Predicted transporter (major facilitator superfamily) |
| nr | gi|695058255|ref|XP_009417436.1| | 0 | PREDICTED: sugar transport protein 7 [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|O04249|STP7_ARATH | 0 | Sugar transport protein 7 |
| trEMBL | tr|B4FZ36|B4FZ36_MAIZE | 0 | Uncharacterized protein {ECO:0000313|EMBL:ACF87379.1} |
| TAIR | AT4G02050 | 0 | sugar transporter protein 7 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000095 | 651271 | 654056 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX017845
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00083.23 | Sugar_tr | 34 | 494 | 7.60E-113 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055085 | Biological Process | transmembrane transport |
| GO:0022857 | Molecular Function | transmembrane transporter activity |
| GO:0016020 | Cellular Component | membrane |
| GO:0016021 | Cellular Component | integral component of membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 2.130 |
| SRR2545915 | Juvenile tuber | 4.180 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 20.360 |
| SRR5643514 | five period of Gastrodia elata | 17.120 | |
| SRR5643515 | five period of Gastrodia elata | 14.690 | |
| SRR5643524 | five period of Gastrodia elata | 20.760 | |
| SRR5643525 | five period of Gastrodia elata | 17.950 | |
| SRR5643528 | five period of Gastrodia elata | 16.800 | |
| SRR5643658 | five period of Gastrodia elata | 11.310 | |
| SRR5643659 | five period of Gastrodia elata | 7.120 | |
| SRR5643660 | five period of Gastrodia elata | 8.050 | |
| SRR5643661 | five period of Gastrodia elata | 8.280 | |
| SRR5643662 | five period of Gastrodia elata | 8.420 | |
| SRR5643663 | five period of Gastrodia elata | 7.280 | |
| SRR5643664 | five period of Gastrodia elata | 9.470 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 18.780 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 19.090 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 20.650 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 20.980 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 21.200 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 22.430 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 25.800 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 22.080 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 19.960 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 22.870 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 21.230 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 21.230 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 11.93 |
| Juven | Juvenile tuber | 19.95 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 24.47 | |
| Mother_Juven | Mother tuber of Juvenile | 22.27 |