Detail information of GWHGAAEX017846/evm.TU.scaffold_88.28


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|530780331|ref|YP_008432137.1|5.00E-131Minichromosome maintenance protein MCM [Thermofilum sp. 1910b]
KOGKOG04810DNA replication licensing factor, MCM5 component
nrgi|700253320|gb|AIU48283.1|0minichromosome maintenance 5 protein, partial [Iris japonica]
Swissprottr|Q6KAJ4|MCM5_ORYSJ0DNA replication licensing factor MCM5
trEMBLtr|A0A097PJT2|A0A097PJT2_9ASPA0Minichromosome maintenance 5 protein {ECO:0000313|EMBL:AIU48283.1} (Fragment)
TAIRAT2G076900Minichromosome maintenance (MCM2/3/5) family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000095655298667582+
Transcript Sequence

Network for GWHGAAEX017846

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module2

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF14551.5MCM_N361165.70E-12
PF17207.2MCM_OB1362713.10E-35
PF00493.22MCM3126413.30E-138
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K02209MCM5, CDC46 DNA replication map03030
Cell cyclemap04110
Cell cycle - yeastmap04111
Meiosis - yeastmap04113

Gene Ontology

GO term OntologyName
GO:0006270Biological ProcessDNA replication initiation
GO:0006260Biological ProcessDNA replication
GO:0005524Molecular FunctionATP binding
GO:0003677Molecular FunctionDNA binding
GO:0003688Molecular FunctionDNA replication origin binding
GO:0042555Cellular ComponentMCM complex
GO:0005634Cellular Componentnucleus

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms4.950
SRR2545915Juvenile tuber5.210
SRP108465SRR5643513five period of Gastrodia elata16.440
SRR5643514five period of Gastrodia elata13.410
SRR5643515five period of Gastrodia elata9.900
SRR5643524five period of Gastrodia elata11.500
SRR5643525five period of Gastrodia elata12.820
SRR5643528five period of Gastrodia elata24.220
SRR5643658five period of Gastrodia elata15.710
SRR5643659five period of Gastrodia elata12.560
SRR5643660five period of Gastrodia elata12.730
SRR5643661five period of Gastrodia elata11.490
SRR5643662five period of Gastrodia elata6.290
SRR5643663five period of Gastrodia elata10.310
SRR5643664five period of Gastrodia elata3.870
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_117.100
SRR6049655Rhizomagastrodiae_C368-T10_good_116.240
SRR6049656Rhizomagastrodiae_C368-T07_good_123.700
SRR6049657Rhizomagastrodiae_C368-T07_good_113.350
SRR6049658Rhizomagastrodiae_C368-T04_good_19.140
SRR6049659Rhizomagastrodiae_C368-T04_good_15.790
SRR6049660Rhizomagastrodiae_C368-T01_good_115.030
SRR6049661Rhizomagastrodiae_C368-T04_good_116.900
SRR6049662Rhizomagastrodiae_C368-T01_good_132.510
SRR6049663Rhizomagastrodiae_C368-T01_good_122.330
SRR6049664Rhizomagastrodiae_C368-T10_good_129.900
SRR6049665Rhizomagastrodiae_C368-T10_good_129.900
SRP279888GastroGastrodia elata tuber 6.63
JuvenJuvenile tuber10.88
Mother_GastroMother tuber of Gastrodia elata 8.37
Mother_JuvenMother tuber of Juvenile 5.85