Detail information of GWHGAAEX017849/evm.TU.scaffold_88.31
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|379012570|ref|YP_005270382.1| | 0 | plasma-membrane proton-efflux P-type ATPase [Acetobacterium woodii DSM 1030] |
| KOG | KOG0205 | 0 | Plasma membrane H+-transporting ATPase |
| nr | gi|402465302|gb|ABO15469.2| | 0 | plasma membrane H+-ATPase LilHA2 [Lilium longiflorum] |
| Swissprot | tr|Q7XPY2|PMA1_ORYSJ | 0 | Plasma membrane ATPase |
| trEMBL | tr|A3RG91|A3RG91_LILLO | 0 | Plasma membrane H+-ATPase LilHA2 {ECO:0000313|EMBL:ABO15469.2} |
| TAIR | AT2G07560 | 0 | H(+)-ATPase 6 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000095 | 672691 | 674937 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX017849
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00690.25 | Cation_ATPase_N | 16 | 79 | 2.20E-13 |
| PF00122.19 | E1-E2_ATPase | 128 | 307 | 2.30E-46 |
| PF00702.25 | Hydrolase | 323 | 599 | 1.10E-16 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K01535 | PMA1, PMA2 | Metabolic pathways | map01100 |
| Oxidative phosphorylation | map00190 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0120029 | Biological Process | proton export across plasma membrane |
| GO:0000166 | Molecular Function | nucleotide binding |
| GO:0008553 | Molecular Function | hydrogen-exporting ATPase activity, phosphorylative mechanism |
| GO:0016021 | Cellular Component | integral component of membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.980 |
| SRR2545915 | Juvenile tuber | 1.750 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 5.500 |
| SRR5643514 | five period of Gastrodia elata | 5.110 | |
| SRR5643515 | five period of Gastrodia elata | 6.350 | |
| SRR5643524 | five period of Gastrodia elata | 4.940 | |
| SRR5643525 | five period of Gastrodia elata | 3.010 | |
| SRR5643528 | five period of Gastrodia elata | 3.520 | |
| SRR5643658 | five period of Gastrodia elata | 3.040 | |
| SRR5643659 | five period of Gastrodia elata | 6.090 | |
| SRR5643660 | five period of Gastrodia elata | 4.500 | |
| SRR5643661 | five period of Gastrodia elata | 6.910 | |
| SRR5643662 | five period of Gastrodia elata | 5.530 | |
| SRR5643663 | five period of Gastrodia elata | 4.100 | |
| SRR5643664 | five period of Gastrodia elata | 5.690 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 6.080 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 6.840 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 8.920 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 5.380 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 5.350 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 3.780 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 8.510 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 6.460 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 10.770 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 12.250 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 8.110 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 8.110 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 2.99 |
| Juven | Juvenile tuber | 2.83 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 6.61 | |
| Mother_Juven | Mother tuber of Juvenile | 4.17 |