Gene detail

Detail information of GWHGAAEX017851/evm.TU.scaffold_88.33

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|42524005\|ref\|NP_969385.1\|	7.00E-148	multidrug ABC transporter permease/ATPase [Bdellovibrio bacteriovorus HD100]
KOG	KOG0054	0	Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily
nr	gi\|743857290\|ref\|XP_010942082.1\|	0	PREDICTED: ABC transporter C family member 13 [Elaeis guineensis]
Swissprot	tr\|Q9SKX0\|AB13C_ARATH	0	ABC transporter C family member 13
trEMBL	tr\|A0A067DZH2\|A0A067DZH2_CITSI	0	Uncharacterized protein {ECO:0000313\|EMBL:KDO44021.1} (Fragment)
TAIR	AT2G07680	0	multidrug resistance-associated protein 11

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000095	738974	798778	-

Transcript Sequence
>GWHTAAEX017851 TACGATGGAGACGATCGGGAATCACGTCGACTCAACGACATCACTGCATCGAAAAGAGAGGTAGCGAAAGCCACCCGATGCACACTACAGTGCCATCGAAGGAACATAACCCTACCACGAAAAAAAATTAGAGTAACTAGAGGATGTCGTCTTCTTCTTCGCTGAATGGAGGAGGGCGTGTGGTCATTTTTGGACACACAATATTCATTTCGTCTTGCTAAAATGCGATTAAAGCTAAGATCTAGTATAATGATGATGGTTTACCGCAAGTGTTTACATGTATGCCTTGCTGAGCGCTCCAAGTTTTCTGAGGGAGAAATTCAAACTTTCATGTCAATTGATACCGGACAGACTGTTAACATCTGTAACAGCTTTCATGATGCCTGGAGTTTACCTGTTCAGATTAGCGTGGCATTATACCTTTTATATACTCAGATCGGTTATGCATTTGTTTCTGGCATTGCAATAACAATCTTGCTCATCCCAGTAAACAAGTGGATTTCAACGATGATTGCACGTGCAACTGAGAAAATGCTGAAAGAGAAGGATGAGAGAATTAGGGGAGCTGGTGAGCTTTTGATGTACATTCGAACTCTGAAAATGTATAGCTGGGAATGCATATTCACGGACCGATTGATGAAGCGGAGATTGTTTGAAGTACAACACCTTTCTACTCGTAAATATTTGGATGCTTGGTGTGTATTCTTCTGGGCAACAACGCCCACGCTTTTTTCCCTTTCTACATTTGGTATATTCGCATTGATGGGGCACTCTCTTGACGCTGCTATGGTGTTTACATGTGTTGCACTTTTCAACATATTAATCTCTCCATTGAATTCTTTTCCATGGGTGATTAATGGACTGATTGATGCTGTAATTTCTGCTAGACGGTTGAGTAAATTCTTGTCCTGTCTTGAGCATTCTGCTGATTTTGGACAGTCTTGTGACGGCAAGCTATCTGTCAGTGGTTCTATACACCACTTTTGGTGCCAAAATTCTATTGACTTTAATCCTGATGCCGTCATATTTCAAGATTCGTTCTTTGATTGGTCAAATTTTGATCGAGAGGAACAGAACCCTGTACTGAGCAGCATTACTTTGAACCTTCCGAAGGGCCTTCTTATTGCAGTAATTGGAGAGGTTGGCTCAGGCAAATCATCCTTATTAAATTCCATTTTGGGAGAGATGAGACTTCTACATGGGTGTATACATTCCTGTGGATCCATAGCATATGTGCCACAGGTACCATGGATACTGTCTGGTTCAATACGTGATAATATTTTATTTGGAAAAGAATTTACTTCTCAAAGATATGGGCAAGTATTGCATGCTTGTGCACTTGATGTTGACATTTCACGCATGGTTGGCGGGGATTTGGCATTTATCGGGGAGAAAGGGCTCAACTTATCTGGGGGTCAGCGGGCTCGTCTTGCACTGGCTAGAGCCATATATTGCAACTCTGATCTGTACTTGCTTGATGATGTTTTGAGTGCTGTTGATACTCATGTTACCAACTGGATTATAAGCAACGCATTGTTGGGTCCTTTGACTAACCAGAAGACACGTGTACTTTGTACACATAATACTCAGGCAATTGCTTCTGCAGATTTAATTGTTATCATGGACAAAGGAAATGTAAGATGGATTGGAACCTTCCATAACTTTCTATCATCTCCATATGCAACAATATCCTTGTTTGAAAACTTTATAGATTCATCATTGCCATTATCTGGGGAAAAAAGGAATGCAAGTGATCTGGATGAAATAACGCCCTATATAGAACAGGAAAGTGATCGTATAGTTTCTATAGACAAAACCCAAGATGCTTCAGAATCAGAGTTCAGGAAGGAAGGCAGAGTTGAAATTGATGTATACAAAAGCTATATGACATTTGCTGGCTGGCCTCTTGTTGTTCTTACTGCTTTATCCGCAATTTTGATGCAAGCATCTCGCAATGGAAATGATCTCTGGCTGTCTCATTGGGTTGATGCCAGAGTTGGAACTGATTTTATAGGCTTTTATCTGGTAATCCTCTCCATCTTCAGTATAATGAATTCAATTTTAACCCTTGTAAGAGCTTTCTCATTTGCATATGGTGGCCTAAGAGCTGCAGTTCAGGTGCATCTGAAACTTCTGAACAAAATTGTCAATGCACCCGTACAATTCTTTGACCAAAATCCAAGTGGACGGATACTTAATAGGTTTTCTTCAGATCTGTACATGATTGATGATTCCCTTCCGTTTATTCTTAACATTCTTATAGCAAACTTCTTAGGGCTTTTGGGCATTGCAGTAATTTTATCTTATGCACAGATTGTGATCTTACTTCTCATATTTCCCCTTTGGTACGCATACAACAAAATACAGTTCTATTATAGGCCTACTTCACGTGAGTTGCGAAGACTTGATAGTGTCTCTCGCTCGCCCATCTATTCCTCTTTTACCGAAACGCTGGATGGGTCGTCAACTATTAAAGCCTTAAAGTCTGAGGATATTTTCATGGCCAAATTCTCTGAGCATGTGGCTCTATATCAGAAAACTTCATACTCTGAGATAACTGCAAGTTTGTGGCTTTCTCTCCGTCTCCAATTACTGGCAGCATTTATTATTTCTTTCGTCGCCCTAATAGCTGTGTCTGGAAGCTCTGGTGATTTCTTTTTTAAACTTGGGACACCTGGGCTGATTGGGCTATCTCTTTCTTATGCCACGCCAATTATCTCATTACTAAGTAGTTTTCTTACGAGTTTCACAGAAACTGAGAAGGAAATGGTTTCTGTTGAGAGGATTCTTCAGTACATGGATATTCCCCAGGAAGAACAACATGGATCAGTGTCTCCTCACCCTGATTGGCCATCCCATGGGCAGATTGAATTTGAACAAGTTACACTAAGATATAAACCCGCACTTCCAGCTGCTTTAAATAGTCTGTCATTTACAATCAAGGCTGGCATGCAGGTTGGAATTGTTGGGAGAACAGGAGCTGGCAAATCCAGTATAATAAATGCTCTTTTTCGCCTTGCTCCCATCTGTAGTGGGCGCATTCTTATAGACGACCTGAATGTGGCTGAGGTTGCTGTGCGGGAACTTCGTCAAAGCTTTGCAGTAGTTCCGCAAAGCCCATTCGTGTTTGAGGGATCGTTAAGGGATAATCTGGACCCATCAGGTAGGACTAGCGATGAAAGAATGTGGGAAGTTCTTGAGAAATGTCATATGAGAAGTGTGATTGAATCTGCTGGCGGATTGGATGTTCATGTGAACGGAAGAGGATGTTCATTTTCTGTCGGTCAGTGTCAGCTTATATGCCTTGCCCGTGCCCTTACAAAATCCTCCAAGATACTTTGCTTGGATGAATGCACTGCTAATACTGACACACAGACGGCATCCGTACTACAAAACACCATCTCTAAAGAGTGCAGAGGCATGACAGTGATCACAATAGCTCACCGAATTTCTGTAGTGTTAAACATGGACCACATTTTAGTTCTCGACAATGGAGTCTTGGCTGAGCAAGGAGACCCACGAGCTTTGCTAAAAGACAGCTGCTCTAGATTCTCTGGTTTTGCTCGTGCTTCCGCTCTGTGA

Network for GWHGAAEX017851

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00664.22	ABC_membrane	18	223	3.60E-14
PF00005.26	ABC_tran	307	439	1.40E-15
PF00664.22	ABC_membrane	587	826	7.50E-37
PF00005.26	ABC_tran	918	1065	1.60E-26

Protein Sequence

>GWHPAAEX017851
MEEGVWSFLDTQYSFRLAKMRLKLRSSIMMMVYRKCLHVCLAERSKFSEGEIQTFMSIDTGQTVNICNSFHDAWSLPVQISVALYLLYTQIGYAFVSGIAITILLIPVNKWISTMIARATEKMLKEKDERIRGAGELLMYIRTLKMYSWECIFTDRLMKRRLFEVQHLSTRKYLDAWCVFFWATTPTLFSLSTFGIFALMGHSLDAAMVFTCVALFNILISPLNSFPWVINGLIDAVISARRLSKFLSCLEHSADFGQSCDGKLSVSGSIHHFWCQNSIDFNPDAVIFQDSFFDWSNFDREEQNPVLSSITLNLPKGLLIAVIGEVGSGKSSLLNSILGEMRLLHGCIHSCGSIAYVPQVPWILSGSIRDNILFGKEFTSQRYGQVLHACALDVDISRMVGGDLAFIGEKGLNLSGGQRARLALARAIYCNSDLYLLDDVLSAVDTHVTNWIISNALLGPLTNQKTRVLCTHNTQAIASADLIVIMDKGNVRWIGTFHNFLSSPYATISLFENFIDSSLPLSGEKRNASDLDEITPYIEQESDRIVSIDKTQDASESEFRKEGRVEIDVYKSYMTFAGWPLVVLTALSAILMQASRNGNDLWLSHWVDARVGTDFIGFYLVILSIFSIMNSILTLVRAFSFAYGGLRAAVQVHLKLLNKIVNAPVQFFDQNPSGRILNRFSSDLYMIDDSLPFILNILIANFLGLLGIAVILSYAQIVILLLIFPLWYAYNKIQFYYRPTSRELRRLDSVSRSPIYSSFTETLDGSSTIKALKSEDIFMAKFSEHVALYQKTSYSEITASLWLSLRLQLLAAFIISFVALIAVSGSSGDFFFKLGTPGLIGLSLSYATPIISLLSSFLTSFTETEKEMVSVERILQYMDIPQEEQHGSVSPHPDWPSHGQIEFEQVTLRYKPALPAALNSLSFTIKAGMQVGIVGRTGAGKSSIINALFRLAPICSGRILIDDLNVAEVAVRELRQSFAVVPQSPFVFEGSLRDNLDPSGRTSDERMWEVLEKCHMRSVIESAGGLDVHVNGRGCSFSVGQCQLICLARALTKSSKILCLDECTANTDTQTASVLQNTISKECRGMTVITIAHRISVVLNMDHILVLDNGVLAEQGDPRALLKDSCSRFSGFARASAL

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05674	ABCC10	ABC transporters	map02010

Gene Ontology

GO term	Ontology	Name
GO:0055085	Biological Process	transmembrane transport
GO:0016887	Molecular Function	ATPase activity
GO:0005524	Molecular Function	ATP binding
GO:0042626	Molecular Function	ATPase activity, coupled to transmembrane movement of substances
GO:0016021	Cellular Component	integral component of membrane

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	41.580
SRP064423	SRR2545915	Juvenile tuber	29.930
SRP108465	SRR5643513	five period of Gastrodia elata	21.820
	SRR5643514	five period of Gastrodia elata	23.260
	SRR5643515	five period of Gastrodia elata	19.090
	SRR5643524	five period of Gastrodia elata	22.070
	SRR5643525	five period of Gastrodia elata	21.680
	SRR5643528	five period of Gastrodia elata	18.060
	SRR5643658	five period of Gastrodia elata	22.750
	SRR5643659	five period of Gastrodia elata	19.010
	SRR5643660	five period of Gastrodia elata	23.000
	SRR5643661	five period of Gastrodia elata	18.040
	SRR5643662	five period of Gastrodia elata	22.630
	SRR5643663	five period of Gastrodia elata	20.680
	SRR5643664	five period of Gastrodia elata	22.910
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	24.840
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	19.960
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	21.330
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	28.150
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	26.480
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	31.600
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	26.880
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	26.840
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	21.050
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	20.670
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	18.360
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	18.360
SRP279888	Gastro	Gastrodia elata tuber	29.34
	Juven	Juvenile tuber	29.88
	Mother_Gastro	Mother tuber of Gastrodia elata	26.28
	Mother_Juven	Mother tuber of Juvenile	28.07