Detail information of GWHGAAEX017852/evm.TU.scaffold_88.35
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG3496 | 3.00E-22 | Cytochrome c oxidase assembly protein/Cu2+ chaperone COX17 |
| nr | gi|571462031|ref|XP_006582175.1| | 2.40E-24 | PREDICTED: cytochrome c oxidase copper chaperone 1 isoform X2 [Glycine max] |
| Swissprot | tr|Q9LJQ9|CX171_ARATH | 2.00E-23 | Cytochrome c oxidase copper chaperone 1 |
| trEMBL | tr|W5GY96|W5GY96_WHEAT | 2.00E-24 | Uncharacterized protein {ECO:0000313|EnsemblPlants:Traes_6DL_9D7A2440E.1} |
| TAIR | AT1G53030 | 3.00E-22 | Cytochrome C oxidase copper chaperone (COX17) |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000095 | 886544 | 886765 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX017852
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF05051.12 | COX17 | 29 | 73 | 1.30E-19 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K02260 | COX17 | Metabolic pathways | map01100 |
| Oxidative phosphorylation | map00190 | ||
| Thermogenesis | map04714 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006825 | Biological Process | copper ion transport |
| GO:0005507 | Molecular Function | copper ion binding |
| GO:0016531 | Molecular Function | copper chaperone activity |
| GO:0005758 | Cellular Component | mitochondrial intermembrane space |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 83.850 |
| SRR2545915 | Juvenile tuber | 87.940 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 120.240 |
| SRR5643514 | five period of Gastrodia elata | 231.250 | |
| SRR5643515 | five period of Gastrodia elata | 192.800 | |
| SRR5643524 | five period of Gastrodia elata | 160.240 | |
| SRR5643525 | five period of Gastrodia elata | 312.070 | |
| SRR5643528 | five period of Gastrodia elata | 291.580 | |
| SRR5643658 | five period of Gastrodia elata | 220.680 | |
| SRR5643659 | five period of Gastrodia elata | 273.230 | |
| SRR5643660 | five period of Gastrodia elata | 336.290 | |
| SRR5643661 | five period of Gastrodia elata | 290.870 | |
| SRR5643662 | five period of Gastrodia elata | 381.950 | |
| SRR5643663 | five period of Gastrodia elata | 293.910 | |
| SRR5643664 | five period of Gastrodia elata | 304.360 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 131.880 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 611.720 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 178.710 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 141.200 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 98.840 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 115.280 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 92.880 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 118.250 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 96.960 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 102.240 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 135.020 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 135.020 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 899.64 |
| Juven | Juvenile tuber | 495.62 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 685.25 | |
| Mother_Juven | Mother tuber of Juvenile | 454.08 |