Detail information of GWHGAAEX017865/evm.TU.scaffold_88.51
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG2537 | 0 | Phosphoglucomutase/phosphomannomutase |
| nr | gi|743891069|ref|XP_010911230.1| | 0 | PREDICTED: phosphoacetylglucosamine mutase [Elaeis guineensis] |
| Swissprot | tr|Q6ZDQ1|AGM1_ORYSJ | 0 | Phosphoacetylglucosamine mutase |
| trEMBL | tr|M0SSL0|M0SSL0_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr4P27480_001} |
| TAIR | AT5G18070 | 0 | phosphoglucosamine mutase-related |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000095 | 1195009 | 1226635 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX017865
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF02878.15 | PGM_PMM_I | 59 | 102 | 1.30E-07 |
| PF02880.15 | PGM_PMM_III | 311 | 402 | 1.10E-06 |
| PF00408.19 | PGM_PMM_IV | 482 | 553 | 3.80E-11 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K01836 | PGM3 | Metabolic pathways | map01100 |
| Biosynthesis of antibiotics | map01130 | ||
| Amino sugar and nucleotide sugar metabolism | map00520 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0071704 | Biological Process | organic substance metabolic process |
| GO:0005975 | Biological Process | carbohydrate metabolic process |
| GO:0004610 | Molecular Function | phosphoacetylglucosamine mutase activity |
| GO:0016868 | Molecular Function | intramolecular transferase activity, phosphotransferases |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 17.890 |
| SRR2545915 | Juvenile tuber | 17.300 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 13.970 |
| SRR5643514 | five period of Gastrodia elata | 13.270 | |
| SRR5643515 | five period of Gastrodia elata | 13.250 | |
| SRR5643524 | five period of Gastrodia elata | 13.030 | |
| SRR5643525 | five period of Gastrodia elata | 18.570 | |
| SRR5643528 | five period of Gastrodia elata | 19.690 | |
| SRR5643658 | five period of Gastrodia elata | 17.940 | |
| SRR5643659 | five period of Gastrodia elata | 17.530 | |
| SRR5643660 | five period of Gastrodia elata | 18.590 | |
| SRR5643661 | five period of Gastrodia elata | 16.860 | |
| SRR5643662 | five period of Gastrodia elata | 19.020 | |
| SRR5643663 | five period of Gastrodia elata | 18.830 | |
| SRR5643664 | five period of Gastrodia elata | 18.520 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 18.440 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 14.620 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 17.980 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 19.180 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 18.990 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 18.950 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 16.640 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 18.810 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 18.550 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 17.240 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 16.450 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 16.450 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 27.65 |
| Juven | Juvenile tuber | 24.22 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 26.56 | |
| Mother_Juven | Mother tuber of Juvenile | 25.25 |