Detail information of GWHGAAEX017866/evm.TU.scaffold_88.52


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG01677.00E-94FOG: Armadillo/beta-catenin-like repeats
nrgi|743811349|ref|XP_010929142.1|1.95E-109PREDICTED: U-box domain-containing protein 13-like [Elaeis guineensis]
Swissprottr|O22193|PUB4_ARATH1.00E-24U-box domain-containing protein 4
trEMBLtr|A0A059CSE3|A0A059CSE3_EUCGR2.00E-102Uncharacterized protein {ECO:0000313|EMBL:KCW81297.1}
TAIRAT2G251307.00E-94ARM repeat superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000009512557351257300+
Transcript Sequence

Network for GWHGAAEX017866

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module2

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00514.22Arm641030.00023
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms8.080
SRR2545915Juvenile tuber5.680
SRP108465SRR5643513five period of Gastrodia elata8.510
SRR5643514five period of Gastrodia elata3.750
SRR5643515five period of Gastrodia elata4.620
SRR5643524five period of Gastrodia elata5.410
SRR5643525five period of Gastrodia elata5.430
SRR5643528five period of Gastrodia elata3.360
SRR5643658five period of Gastrodia elata1.990
SRR5643659five period of Gastrodia elata1.480
SRR5643660five period of Gastrodia elata2.910
SRR5643661five period of Gastrodia elata2.430
SRR5643662five period of Gastrodia elata2.280
SRR5643663five period of Gastrodia elata1.670
SRR5643664five period of Gastrodia elata2.840
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_118.150
SRR6049655Rhizomagastrodiae_C368-T10_good_117.690
SRR6049656Rhizomagastrodiae_C368-T07_good_116.980
SRR6049657Rhizomagastrodiae_C368-T07_good_116.470
SRR6049658Rhizomagastrodiae_C368-T04_good_112.660
SRR6049659Rhizomagastrodiae_C368-T04_good_110.820
SRR6049660Rhizomagastrodiae_C368-T01_good_18.030
SRR6049661Rhizomagastrodiae_C368-T04_good_117.760
SRR6049662Rhizomagastrodiae_C368-T01_good_19.530
SRR6049663Rhizomagastrodiae_C368-T01_good_13.690
SRR6049664Rhizomagastrodiae_C368-T10_good_110.560
SRR6049665Rhizomagastrodiae_C368-T10_good_110.560
SRP279888GastroGastrodia elata tuber 3.24
JuvenJuvenile tuber2.46
Mother_GastroMother tuber of Gastrodia elata 0.58
Mother_JuvenMother tuber of Juvenile 1.45