Gene detail

Detail information of GWHGAAEX017867/evm.TU.scaffold_88.53

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG0304	6.00E-143	mRNA deadenylase subunit
nr	gi\|695058275\|ref\|XP_009417447.1\|	3.31E-154	PREDICTED: probable CCR4-associated factor 1 homolog 7 [Musa acuminata subsp. malaccensis]
Swissprot	tr\|Q9SKZ2\|CAF1G_ARATH	4.00E-147	Probable CCR4-associated factor 1 homolog 7
trEMBL	tr\|M0TZY5\|M0TZY5_MUSAM	1.00E-154	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr9P13270_001}
TAIR	AT1G80780	6.00E-143	Polynucleotidyl transferase, ribonuclease H-like superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000095	1285251	1287646	+

Transcript Sequence
>GWHTAAEX017867 TTCGATCCCCGTCGCCACAATTATCCAATTGAGAATAAGTTGATTGATGACAAACCATTTGATGTGATATGGATTAAGGTTACCATCGAGGAGGGCTGCATGCGGAGAAATTAGGGTACCATCGAAGAAGCCGATTAAACAATGTGTTATGAAATTCGAGAGAAATAGTGAACGCAACAACATATATTTGGGTTTGTTCAGTTTCACATTGAGGATGTGATGTATATTAGAGAACAGAGGAGGATCTCCAAAGCATGAAGTGGCTGTCGTGCGGGTTGGGCTGGGCAACGAGATTTTTGTTGCTCCACTGATATTGAGCGGAGGCCTTGAGCTGATATAAAAAATAAAGCAGAGAAAATGGTGAAGGTTAAAATATGAAAATGATGCAGTAAAGAACGGTAAGATAATGACTTAAAAAAGACGAATACTAATGGTGTGACAGAAATATTGAGACATAGAAAGAAAATTAATTTTATAAATTTAAAGTGATTCCTAAGATTGAAAATGGATCGGTAAAGACTTAAATTATTTAATCACGTGATCGATGTGATATACTTTTATTTAATTATTAAAAAGTCTAGCATTTCTCATATTCTTACAATTACAATTTCTATGTACTTTGACTAATATCTAATTTATCTTCATTCGTTTAGATACAGTGAAAGCAGTATAATTGATCAATAATCTTTGTAGTTAAAAACTATTGAATTTGAATAGAAGAGTTCAGCACATTTCAATTATAAAACACTTGTGTATATATAAATAAAAAAAAAGGCGAAGCCAACTCACCGTATTTTCTATTTTAAGACGTAATAGAACTACGTGGCATTACTACAGTGGAGAAGCTGAGGCTGCCGTATGTGGAAGAAATCAGGTACCGTCTAAGCCGAGATCCGGGCCATCCGCACCGCTCCTGCCATTTGTTTATTTATTTTATAAATCAATAAATAAATATCATGTAACATTTTCTGATTATGCAAGGGGCAAAATGGGACAGCAGGAGGGCTCAGCCTTCGTTGCGGGGCCCATAAAGGTTGCCTCATTTGACCAATAGATTATTCGATTTGCTTATATGGGTCACCCATCCAGCCAAAAAATTCCCTCCGGAAACCCTAATCGAAACTCCCGCAGTCCAAAGGAAAAATCGCGGATCTCTCGTCTAATCGTCTCTCATTCCTCGGCATCATCTTCCGAAGACCGCATGTCTGAGAGATGTCTGTGACGCCGAACAACGATAATGTTCAGATCCGGGAGGTGTGGGAAGAAAACCTGGAGATGGAGTTTGCCCTTATCAGGGAGATTGTAGACGACTTCCCGTATGTTGCCATGGACACGGAGTTTCCCGGGATCGTGTGTCGCAACGTGGGGAATTTCAAATCAACTTCTGACGCCCACTACGCCACGCTTAAAGCTAACGTTGACATGTTGAACCTGATCCAACTCGGCCTCACCTTCTCAGATGAGCGCGGAAACCTTCCGACCTGTAACACCGACGTTGGCTGTGTGTGGCAGTTCAACTTTCGTGAGTTCGACGCCCAGAGCGATGTTTATGCCGCCGATTCCATCGATCTCCTTCGCCAGAGCGGGATCGACTTTGCGAAGAACAGAGAGCGTGGTGTTAACGCCCAACACTTTGCCGAGCTTCTCATGTCGTCTGGTGTCGTTCTGAACGAGGAAGTCCAGTGGATTACCTTCCACAGTGGATATGACTTTGGGTACATTCTGAAGCTACTCACATGGAAAAGTCTTCCAGACACCCAGTCTGAATTTTTTAGCCTCATAAAAATTTACTTTCCCACATTGTATGACATTAAGCACCTCATAAAATTCTGCAACAATCTCCACGGTGGTCTTAGCAAACTCGCTGAACTGCTGGATGTGAAGAGGGTTGGGACCGGCCACCAGGCTGGTTCTGACAGTCTTCTCACTTCATGCACGTTCAGGAAGCTTAGGGAATTTTATTTTAAAGGGTCATTGGAGAGATATATTGGTGTATTGTATGGCCTTGGTGTTGAACGTTGACAGAATACTGGTACTAATTGAAAAAAAATATATAAAGAAGCCTAATAAAAATAAGATTTGAATCGGAAAAGTTATGTCTCTATCTTTTTTTTATCTTTTCTTGAGCATTGGCTTTTGTGATGTTTGTATTGCTTCTTCCTATTCTCTTATTTTTTATTTTTCATAGTGTGCTACGTATGTAACTTCTTAGTAGATGCATAAGATTGTTTACCTTGCTATGCATTTTTGTCTACTTCTGCTGATTAGCTTTAGGCCTG

Network for GWHGAAEX017867

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04857.19	CAF1	15	136	2.00E-09
PF04857.19	CAF1	156	243	1.30E-07

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12581	CNOT7_8, CAF1, POP2	RNA degradation	map03018

Gene Ontology

GO term	Ontology	Name
GO:0003676	Molecular Function	nucleic acid binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	127.110
SRP064423	SRR2545915	Juvenile tuber	149.340
SRP108465	SRR5643513	five period of Gastrodia elata	55.190
	SRR5643514	five period of Gastrodia elata	44.840
	SRR5643515	five period of Gastrodia elata	52.100
	SRR5643524	five period of Gastrodia elata	51.130
	SRR5643525	five period of Gastrodia elata	70.050
	SRR5643528	five period of Gastrodia elata	88.310
	SRR5643658	five period of Gastrodia elata	93.760
	SRR5643659	five period of Gastrodia elata	59.350
	SRR5643660	five period of Gastrodia elata	60.760
	SRR5643661	five period of Gastrodia elata	60.140
	SRR5643662	five period of Gastrodia elata	53.610
	SRR5643663	five period of Gastrodia elata	55.840
	SRR5643664	five period of Gastrodia elata	58.090
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	57.300
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	85.250
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	42.010
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	70.220
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	45.980
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	61.260
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	52.790
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	46.060
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	33.690
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	33.480
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	38.880
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	38.880
SRP279888	Gastro	Gastrodia elata tuber	38.33
	Juven	Juvenile tuber	74.74
	Mother_Gastro	Mother tuber of Gastrodia elata	59.77
	Mother_Juven	Mother tuber of Juvenile	72.61