Detail information of GWHGAAEX017870/evm.TU.scaffold_88.56


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|333910700|ref|YP_004484433.1|3.00E-117proteasome-activating nucleotidase [Methanotorris igneus Kol 5]
KOGKOG0652026S proteasome regulatory complex, ATPase RPT5
nrgi|702507344|ref|XP_010039946.1|0PREDICTED: 26S protease regulatory subunit 6A homolog [Eucalyptus grandis]
Swissprottr|Q9SEI2|PS6AA_ARATH026S protease regulatory subunit 6A homolog A
trEMBLtr|A0A072UIN9|A0A072UIN9_MEDTR026S proteasome regulatory particle triple-A ATPase protein {ECO:0000313|EMBL:KEH29296.1}
TAIRAT3G055300regulatory particle triple-A ATPase 5A

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000009513525291371761-
Transcript Sequence

Network for GWHGAAEX017870

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00004.28AAA2043361.80E-42
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K03065PSMC3, RPT5 Proteasome map03050

Gene Ontology

GO term OntologyName
GO:0030163Biological Processprotein catabolic process
GO:0005524Molecular FunctionATP binding
GO:0016787Molecular Functionhydrolase activity
GO:0005737Cellular Componentcytoplasm

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms116.530
SRR2545915Juvenile tuber125.760
SRP108465SRR5643513five period of Gastrodia elata104.390
SRR5643514five period of Gastrodia elata110.830
SRR5643515five period of Gastrodia elata99.330
SRR5643524five period of Gastrodia elata107.970
SRR5643525five period of Gastrodia elata80.600
SRR5643528five period of Gastrodia elata98.650
SRR5643658five period of Gastrodia elata71.810
SRR5643659five period of Gastrodia elata108.260
SRR5643660five period of Gastrodia elata107.210
SRR5643661five period of Gastrodia elata111.750
SRR5643662five period of Gastrodia elata114.340
SRR5643663five period of Gastrodia elata110.220
SRR5643664five period of Gastrodia elata106.240
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1103.470
SRR6049655Rhizomagastrodiae_C368-T10_good_1110.380
SRR6049656Rhizomagastrodiae_C368-T07_good_1108.000
SRR6049657Rhizomagastrodiae_C368-T07_good_188.770
SRR6049658Rhizomagastrodiae_C368-T04_good_187.940
SRR6049659Rhizomagastrodiae_C368-T04_good_182.790
SRR6049660Rhizomagastrodiae_C368-T01_good_185.370
SRR6049661Rhizomagastrodiae_C368-T04_good_187.930
SRR6049662Rhizomagastrodiae_C368-T01_good_1133.500
SRR6049663Rhizomagastrodiae_C368-T01_good_1108.810
SRR6049664Rhizomagastrodiae_C368-T10_good_1145.950
SRR6049665Rhizomagastrodiae_C368-T10_good_1145.950
SRP279888GastroGastrodia elata tuber 129.88
JuvenJuvenile tuber149.25
Mother_GastroMother tuber of Gastrodia elata 95.81
Mother_JuvenMother tuber of Juvenile 128.62