Detail information of GWHGAAEX017871/evm.TU.scaffold_88.59
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|297539092|ref|YP_003674861.1| | 5.00E-17 | Fis family two component sigma54 specific transcriptional regulator [Methylotenera versatilis 301] |
| KOG | KOG1601 | 9.00E-120 | GATA-4/5/6 transcription factors |
| nr | gi|743811321|ref|XP_010929130.1| | 0 | PREDICTED: two-component response regulator ARR12-like [Elaeis guineensis] |
| Swissprot | tr|P62598|ARR12_ARATH | 1.00E-119 | Two-component response regulator ARR12 |
| trEMBL | tr|F6GZ31|F6GZ31_VITVI | 2.00E-170 | Putative uncharacterized protein {ECO:0000313|EMBL:CCB45217.1} |
| TAIR | AT2G25180 | 9.00E-120 | response regulator 12 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000095 | 1421821 | 1427405 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX017871
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00072.23 | Response_reg | 26 | 134 | 2.40E-21 |
| PF00249.30 | Myb_DNA-binding | 220 | 267 | 5.30E-06 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | GARP-ARR-B |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K14491 | ARR-B | Plant hormone signal transduction | map04075 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0000160 | Biological Process | phosphorelay signal transduction system |
| GO:0007165 | Biological Process | signal transduction |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 54.260 |
| SRR2545915 | Juvenile tuber | 29.130 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 33.940 |
| SRR5643514 | five period of Gastrodia elata | 42.850 | |
| SRR5643515 | five period of Gastrodia elata | 42.410 | |
| SRR5643524 | five period of Gastrodia elata | 46.710 | |
| SRR5643525 | five period of Gastrodia elata | 16.630 | |
| SRR5643528 | five period of Gastrodia elata | 44.950 | |
| SRR5643658 | five period of Gastrodia elata | 15.820 | |
| SRR5643659 | five period of Gastrodia elata | 19.850 | |
| SRR5643660 | five period of Gastrodia elata | 16.980 | |
| SRR5643661 | five period of Gastrodia elata | 21.150 | |
| SRR5643662 | five period of Gastrodia elata | 14.580 | |
| SRR5643663 | five period of Gastrodia elata | 11.510 | |
| SRR5643664 | five period of Gastrodia elata | 13.480 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 29.710 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 34.560 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 27.350 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 31.290 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 38.130 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 47.620 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 37.810 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 37.800 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 41.240 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 44.850 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 28.050 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 28.050 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 15.59 |
| Juven | Juvenile tuber | 27.02 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 56.73 | |
| Mother_Juven | Mother tuber of Juvenile | 52.00 |