Gene detail

Detail information of GWHGAAEX017873/evm.TU.scaffold_88.62

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG1990	4.00E-167	Poly(A)-specific exoribonuclease PARN
nr	gi\|743862682\|ref\|XP_010943605.1\|	0	PREDICTED: poly(A)-specific ribonuclease PARN-like [Elaeis guineensis]
Swissprot	tr\|Q8W4C3\|PARNL_ARATH	1.00E-167	Poly(A)-specific ribonuclease PARN-like
trEMBL	tr\|M0TWN7\|M0TWN7_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr9P01800_001}
TAIR	AT3G25430	4.00E-167	Polynucleotidyl transferase, ribonuclease H-like superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000095	1517569	1541067	+

Transcript Sequence
>GWHTAAEX017873 GCTTCAAGCTTTTTCACGCTCCTTTTTGAGGTGCACTCCATTGAGTTCAGAAGAATTGTATAAATGAATCCAAATTAGACATCCCAAACCCAAGACAGCTTGAAGTGGCGAGACGATGGCCGCTGTGGCCGCCGTAAAGGCTTTCTCAGTTGCCTCTCCGGTGAGGCAAGTAACCAAGTCCAACTTCGCCTCCGCCATCCAGCAATTCAAATCCGACATCGAAGCCTCCGAATTCGTTGCCATATCCACTCGCAAGACCGGAGACTTTTCCTCTTCTTCCTCTCACGGCCGTTCATGGCGGAATGTAGTCCCCATCGACACATCCGAGACCGCCTATCTCAAATCCAAGTCTGCCGCCGAGACTTTCGAGCTTTCCCAATTTGCCGTCTGCCCCTTCTCCATCCGCGGCTCAAAGGTCCTTGCCTTCCCTTATAACTTTCTTCTCTTCCCCAGAGATGAGCTCTCCCTAGGATTGCCTTCTTATAGTTTTTCCTGCCAAGCTTCGTTTCTTGCTTCCATGGCTCGCGAGGGTTTCGATTTCAATTCCTGGATATATAATGGCATTTCATACTTGTCCAGAGCGCAGGAAGCCATGTTGAGGGAGCGAAATCCTAGCCCGTGGATGCATTCGCTGATTGTTTCTTCTCGAAATCCATCTGTTGCTGATTCGATTTTCAAGGAAAGAATCAAGTCTAGGATCTTACACTGGATGAATGCGTGCAGGTGTGCAAGCCAAACGAAAGATGGATCTCTTGCTCAGTCTTTAAGGAAACTTTTTGTTGGGGAAGCTTATGGCTCTAGACCTGGACTGAGTTTAGATATTTGTAGTGAAAAGCAGGTGCAGATGATTTTTGAGATTGTTGAACAGATTTCTGATAATTTAGTACCCATAATTAACACTGATATTGGAGAACAGCCCAAGGCTGTGCGTATAGTATTAACCAGCTCGGAAGAGGATAAGAAAATACTTTTGACAGAACTTCAGAGTCTTAAGGATGAGCAGAATCTCAAAATCCGTGGATTCCGGCAAGTCATCGATATAATCTCAAGTTCCCAAAAAACAGTAGTTTCCTACAACTGCCTGCATGATTTTACCTTTATTCATCAGAAGTTTGTCGCTCCATTACCTGCAACTCTACCAGAATTCATGTACTCATTGAAGCTTCTATTCTCCAGTGTGATTGATCTCAATCATTTGTTGAAGGAGTTTGGACCTTTAAGGAAAGCAAAAAATATCACTAGTGCCATGAGTTATATAAAGAGGCAGTTTTTTGTGCCCATAGAACTTGAAGTTCCTGAGCAAGTTGAGGATGAAAACAACAATCATGGAAACAATGTTCTTAAGTTAACATCTTTGTTTGCTAAGCTTAATAGGCTGTTGGAGAATGCCACTTCTTCCAGTGAAACCACACATAAGAACACTAAGCAAATCCGAGATTATGCAAACATTTTTAATCCTGCATCACTAGCACTTCATGACTTTTGTGAGGATAATGAGGCTAGTTTTTGGATTGATAGTAGCAGGAGAGTAAGCACAGATAGAATACTCTTCTTATGGGGATTTGGCAGTTTAATTCCTGCAGCAGAGCTAAAACATCGTCTCCTGCAAATTCATCCAGCTTTTTTAGAAGAATTTGATGTTAAATTTGTAGACAAGAGCTGCGCTGTTGTTGTTTTTCAAAAGTCTGAATCTGCTGCAACATTGCTTAAAGATATGAGTTTGGTTGATTCTGTTCATGGTGTTTTAAGAGAAATGGTTGTGGAAGGGTTGAGGGCAGCAGGATATGATGCCTACAAGAAGGTCTGTAAGTTGGGCCATTGGAAGGAAGAGTTAGCTGATTCATTAGAATTTGTTTTGACCGAGACCTTGGAAGGTTTTTGTTCTCCATCTAGCACAGATGCAGATGAGATTCAATGGAATATCCTCAGGAAAGGCCACATATCATGGGCTTAGATTCATCGGCGTGGGAGATTTCTATCCATCCGATCAAGCGATCCCATGATTATCTTAATTTATTCATCAATGTGGCTGGCTGATTCCTTTGCTCACATTGTTGGCGTTCTCATTGCTTTTCCTACTTAAGACACTGTTGAGTGCATTATCAGTGCCGTAAACGCATAATTATATGGAGAAGCTTCCTCCTATATGGCTTGCAGTCAATAAGCCTAAAGTACAACATCTCTTTATTTAATCAAACACATGCATTGAATTGCACATCTCATTATTTTGGGTATCAGAGCTCAAAAAGAAGGTGTGAATGGCTTAGCACTCTGGTTTCCAAGACGGTCAGGATTTTCTCGATCAACAGCTTGCTTACAAAAAAAATAAATATTTTTTCATGGGGAGTTGACGTATGTGTGCCTGTAAAATAAAGTGCGGATGCTTGCCCTCTCTACAAGGTGGGGAATACTCTTCCCAGCTTTGGAAGAAATAACTGAAAAAATAAGAGAATAGAAAGGAAAAGAAAGGGGCAATAAAGCCTGAAGTGTTGACCTCATTTTTACTACTGTTTAAGGATTCGTCTAGATAATTAAACGACTAATATTCTTGTTGAAGTCATTAGTAGTTTAGCAGATGAAATGGAATATTCCTTTTGACAATGCACGATGCTTCTTATCCAAACACTGTAAAGGCATACAAATTAATTTTATGATTTTA

Network for GWHGAAEX017873

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04857.19	CAF1	19	560	1.70E-54

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01148	PARN, PNLDC1	RNA degradation	map03018

Gene Ontology

GO term	Ontology	Name
GO:0003676	Molecular Function	nucleic acid binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	5.910
SRP064423	SRR2545915	Juvenile tuber	5.600
SRP108465	SRR5643513	five period of Gastrodia elata	3.710
	SRR5643514	five period of Gastrodia elata	4.860
	SRR5643515	five period of Gastrodia elata	5.120
	SRR5643524	five period of Gastrodia elata	5.450
	SRR5643525	five period of Gastrodia elata	3.800
	SRR5643528	five period of Gastrodia elata	7.670
	SRR5643658	five period of Gastrodia elata	3.920
	SRR5643659	five period of Gastrodia elata	5.580
	SRR5643660	five period of Gastrodia elata	5.270
	SRR5643661	five period of Gastrodia elata	4.670
	SRR5643662	five period of Gastrodia elata	5.710
	SRR5643663	five period of Gastrodia elata	4.880
	SRR5643664	five period of Gastrodia elata	4.320
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	4.880
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	5.180
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	5.970
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	5.120
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	4.380
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	5.280
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	4.710
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	5.770
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	5.250
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	6.060
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	4.630
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	4.630
SRP279888	Gastro	Gastrodia elata tuber	4.90
	Juven	Juvenile tuber	4.79
	Mother_Gastro	Mother tuber of Gastrodia elata	12.77
	Mother_Juven	Mother tuber of Juvenile	12.12