Detail information of GWHGAAEX017875/evm.TU.scaffold_88.66
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG0498 | 3.00E-172 | K+-channel ERG and related proteins, contain PAS/PAC sensor domain |
| nr | gi|672141186|ref|XP_008794413.1| | 0 | PREDICTED: probable cyclic nucleotide-gated ion channel 14 [Phoenix dactylifera] |
| Swissprot | tr|Q9SJA4|CNG14_ARATH | 2.00E-172 | Probable cyclic nucleotide-gated ion channel 14 |
| trEMBL | tr|M0SVQ4|M0SVQ4_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr5P04750_001} |
| TAIR | AT2G24610 | 3.00E-172 | cyclic nucleotide-gated channel 14 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000095 | 1648163 | 1675787 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX017875
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00520.30 | Ion_trans | 8 | 293 | 8.00E-26 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K05391 | CNGC | Plant-pathogen interaction | map04626 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055085 | Biological Process | transmembrane transport |
| GO:0006813 | Biological Process | potassium ion transport |
| GO:0006811 | Biological Process | ion transport |
| GO:0005249 | Molecular Function | voltage-gated potassium channel activity |
| GO:0005216 | Molecular Function | ion channel activity |
| GO:0016020 | Cellular Component | membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 7.080 |
| SRR2545915 | Juvenile tuber | 7.600 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 8.030 |
| SRR5643514 | five period of Gastrodia elata | 5.850 | |
| SRR5643515 | five period of Gastrodia elata | 6.370 | |
| SRR5643524 | five period of Gastrodia elata | 5.910 | |
| SRR5643525 | five period of Gastrodia elata | 10.970 | |
| SRR5643528 | five period of Gastrodia elata | 9.360 | |
| SRR5643658 | five period of Gastrodia elata | 9.330 | |
| SRR5643659 | five period of Gastrodia elata | 8.650 | |
| SRR5643660 | five period of Gastrodia elata | 8.050 | |
| SRR5643661 | five period of Gastrodia elata | 8.020 | |
| SRR5643662 | five period of Gastrodia elata | 7.480 | |
| SRR5643663 | five period of Gastrodia elata | 7.850 | |
| SRR5643664 | five period of Gastrodia elata | 8.580 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 7.080 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 6.310 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 5.210 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 8.080 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 8.660 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 10.640 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 8.580 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 7.990 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 5.570 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 7.540 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 5.720 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 5.720 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 12.12 |
| Juven | Juvenile tuber | 11.51 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 16.07 | |
| Mother_Juven | Mother tuber of Juvenile | 12.03 |