Gene detail

Detail information of GWHGAAEX017877/evm.TU.scaffold_88.68

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|71906034\|ref\|YP_283621.1\|	7.00E-26	phospholipase D/transphosphatidylase [Dechloromonas aromatica RCB]
KOG	KOG1329	0	Phospholipase D1
nr	gi\|672180242\|ref\|XP_008810306.1\|	0	PREDICTED: phospholipase D alpha 1-like [Phoenix dactylifera]
Swissprot	tr\|Q43007\|PLDA1_ORYSJ	0	Phospholipase D alpha 1 (Precursor)
trEMBL	tr\|K3ZQR1\|K3ZQR1_SETIT	0	Phospholipase D {ECO:0000256\|PIRNR:PIRNR036470}
TAIR	AT3G15730	0	phospholipase D alpha 1

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000095	1768941	1773421	+

Transcript Sequence
>GWHTAAEX017877 ATTCGATTCAACTGGCGGAGTTAGTTTCAGCTCATCGTTTTCAATTTTATTTCTTTAATTTCCAGTTTTCTTTAAGCAAAAAAATTTGGGGTCACGAGCGTATAAATTCGAGTGCAGAGCTCTGGGTTCTTCAGAGCGGAGCAGTGGATTAAATAAGAAGAAGAGCAATTAGCTTCAGAAAGAATATCCATGGAAAAACTGAATGAGGCTCCTCAACTCATCCACGGAGTTCTTGATGTAACTATCTTCGAAGCAGCTCATCTCCATCACTTGCTCCACGGAACGCTTTTGAAGGTTCAAGAGAGGATAGAGGAGGCCTTGCACCTGAAAGAACTGACGCACAGAAAGCTGTATGCCACTGTAGACATCGGCATTGCAAGAGTAGCAAGAACCCGGGAAGTGGAGTTCCAGTCGACAAACCCCAAGTGGAACGAGTCATTCAGGATCTACTGCGCCCACACTTCATCCTCCATCGTTATCTCCATCAAAGACCAGCACATTGTCGGCGGCAAGGTCATCGGACGCGCCACGATTCCCACAGTCGACGTTCTCCGATCCGAGCTAATCGAAGGCTGGCTCAACATCTACGGCGACGATGGCCACAGAGTCAAGGAAGCGCAAGTCCGCGCGTCCCTAAAGTTCTTCGAAGCCGCTTCCGATCCATTCTGGAATGCAGGGATCAAACTCCCCGCATTCAACGGCATCCCTAATTCCTACTTCCAAGAAAGAACAGGATGCGAGGTCACGCTGTATCAGAACACGCACCTTTCGAACACCTTCCATCCTCAGATCCGCCTTGCCGGGCACAGCAAGGCTTACCACCCAAGAAGACTATGGGAAGATCTTTACATCGCGATCTCAGACGCCGAGCATTTCGTCTACGTCGCGGGTTGGTCCGTGAACGTGAACACAACCTTAGTCCGTGATCCCGAAAGAATGATTCCCGGATCGGAGGGAATCTCCATCGGCGAGCTGCTGAAAAGAAAGGCAGATGAAGGGGTGCTGGTTCTAGTCATGGTGTGGCAGGACCGGACATCGATCTCTTTGCTGGGAAACGCCGGTCTGATGAAGACCCACGACGAAGAAACCTACCATTTCTTCGAGGGAAGCAAGGTGCGGTGCTTTCTTTGCCCTAGAAACGCGGATCCTTCGCTCACGGCCGTGCAGCATCTTGAGGTCAAGACCGAGTTCACCCATCACCAGAAAACCGTATCACTCGACGTTTCCAATCCTGGCAACGGCAAGGCTCGCCGCGTTGCGAGCTTTATAGGGGGGATCGATCTTTGCGGAGGAAGATACGACGATGAGAAGCACACGCTGTTCGGCGGATTGGATACTGTCTATAAGAACGATTTCCTGCAGCATAACTTCCCGGATGCGAGCCTTCGTTTTGGCGGGCCGAGAGAGCCGTGGCATGATCTTCATTCCAAGCTCGAGGGGGCGGCAGCCTGGGATGTGCTCACGAACTTTGAGCAGAGGTGGAAGAAGCAGGCGCCAAAGGAGTTCATCGATTGCTTGCTGAATGTTCGTGAGAGGCCCGATGTCTTCCCCTTTCCTTCCATCTTAAGAACCTCGGCCGAGTCCTGGAACGTGCAGGTTTTCCGATCTATCGATGATTCATCCGTCGTCGGCTTCCCCTCGAATCCTGCTGAGGCTTTCAATATGGGACTGACGACTGGGAAGAACATCACCATCGATCAGAGCATACATTCAGGGTACGTTGAGGCTATAAGAAGGGCGAAGAGATTCATTTATATTGAGAACCAGTACTTTATTGGGAGCTCAGCTTCGTGGAAGCAGGATCAGGATGCAGGGTGCTTGAATCTAGTACCCATTGAGATTGCTTTGAAGATTGCGAGCAAGATAAAGACTGGTGAGAGGTTCGCGGCTTATGTGGTTTCGCCGATGTGGCCGGAAGGAGTCCCGGAAGGGGGCGTGGTTCAGGCAATCCTGCACTGGAATAGGCTGACTATGGATATGATGTATGGAATTATAGCAGGGGCAATAGAGGAGGCAGGATTGGCTGGGAAGGCTTACCCAACTGATTATTTGAATTTCTTCTGTTTGGGGAACAGGGAACTGAAGCAGCCCGGGGAGTATGTGCCACCTGATAGGCCGGAGCCTGAGACCGATTACTGGAAGGCTCAGGTTAACCGGCGGTTTCTCATCTATGTGCATGCCAAGGTTATGATTGTGGATGATGAGTATGTGATCATTGGCTCGGCAAACTTAAACCAGCGATCTTTGGCGGGCGACAGAGACAGCGAGATTGCTCATGGATCCTACCAGCCGGCTCATCTGAATGCGGATCACGGCCAAGCACGGGGACTCGTCCATGGCTACCGGATGTCGCTATGGTTTGAGCACTTCATGAGTCATCACGCAGGCTTGCATCATGTCTTCCTCGACCCCGAGAGCTTGGAATGCGTGAGAACAGTGAGGAGAATCGCTGAGAATCTGTGGGAGAAATACATTGGGGAGGAGGTCGTGAACTTGCCGGGGCATCTGTTGCCCTTTCCAGTCAGGGTGTCTGCCGATGGAGAGCTGTCGGAGCTCACTGCTGATGGCTGCTTCCCAGACACTAAGGCATCTGTTAGAGGTGATGGCTCTGTGACATCTTTGGCCGTGCCTCCTATTCTGGGCACTTAGTAGTTTCAGATTGTTTTTCATTTGAATAAACTTTTGCTTCTTTGCTGCTGCTAGGGATTGAATATGGTATGTGATTCTGCTGCTGTGGTTGTAAACTTGAAGACCTACATATATAATATTTCAAGTTCCCAACTTGAAGGCTTCCTTGGTTGCACAACCCATTTGCATAAAAATTATTAAAACAAAACTGTTTATGTGCGGTTCTGCAAGAACTCGTGGATTTGCACTTTTTAAAAATTGTAGTGCATATTTTTATTTGTAGTCTATGCACGTATTTGTGATAAATGATATTCTTAGTCTAGTTTGGCATGTGACATCTGTGTTAATTAACTAGTTTAAAGGCTTGAATCTTGGACAAG

Network for GWHGAAEX017877

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module7

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00168.29	C2	14	132	2.60E-13
PF00614.21	PLDc	660	685	1.30E-07
PF12357.7	PLD_C	736	805	1.90E-25

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01115	PLD1_2	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Glycerophospholipid metabolism	map00564
		Ether lipid metabolism	map00565
		Ras signaling pathway	map04014
		Phospholipase D signaling pathway	map04072
		Sphingolipid signaling pathway	map04071
		cAMP signaling pathway	map04024
		Endocytosis	map04144
		Fc gamma R-mediated phagocytosis	map04666
		GnRH signaling pathway	map04912
		Thyroid hormone signaling pathway	map04919
		Glutamatergic synapse	map04724

Gene Ontology

GO term	Ontology	Name
GO:0046470	Biological Process	phosphatidylcholine metabolic process
GO:0005509	Molecular Function	calcium ion binding
GO:0003824	Molecular Function	catalytic activity
GO:0004630	Molecular Function	phospholipase D activity
GO:0016020	Cellular Component	membrane

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	63.440
SRP064423	SRR2545915	Juvenile tuber	160.100
SRP108465	SRR5643513	five period of Gastrodia elata	65.350
	SRR5643514	five period of Gastrodia elata	49.200
	SRR5643515	five period of Gastrodia elata	52.420
	SRR5643524	five period of Gastrodia elata	58.220
	SRR5643525	five period of Gastrodia elata	79.230
	SRR5643528	five period of Gastrodia elata	116.810
	SRR5643658	five period of Gastrodia elata	46.700
	SRR5643659	five period of Gastrodia elata	38.350
	SRR5643660	five period of Gastrodia elata	27.820
	SRR5643661	five period of Gastrodia elata	29.060
	SRR5643662	five period of Gastrodia elata	40.060
	SRR5643663	five period of Gastrodia elata	32.690
	SRR5643664	five period of Gastrodia elata	31.810
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	74.550
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	121.430
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	79.790
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	56.320
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	39.280
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	36.860
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	50.290
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	57.400
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	55.500
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	42.730
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	90.020
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	90.020
SRP279888	Gastro	Gastrodia elata tuber	40.68
	Juven	Juvenile tuber	918.53
	Mother_Gastro	Mother tuber of Gastrodia elata	123.66
	Mother_Juven	Mother tuber of Juvenile	356.43