Detail information of GWHGAAEX017879/evm.TU.scaffold_88.73


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|51893583|ref|YP_076274.1|4.00E-19signal peptidase I [Symbiobacterium thermophilum IAM 14863]
KOGKOG15682.00E-63Mitochondrial inner membrane protease, subunit IMP2
nrgi|743776627|ref|XP_010918725.1|1.40E-83PREDICTED: mitochondrial inner membrane protease subunit 2 isoform X1 [Elaeis guineensis]
Swissprottr|O04348|TPP1_ARATH3.00E-13Thylakoidal processing peptidase 1, chloroplastic (Precursor)
trEMBLtr|M0SZX9|M0SZX9_MUSAM3.00E-76Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr5P19500_001}
TAIRAT3G089802.00E-63Peptidase S24/S26A/S26B/S26C family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000009518112171821535+
Transcript Sequence

Network for GWHGAAEX017879

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00717.22Peptidase_S24341052.60E-10
PF10502.8Peptidase_S261091478.40E-07
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K09648IMP2 Protein export map03060

Gene Ontology

GO term OntologyName
GO:0006508Biological Processproteolysis
GO:0008236Molecular Functionserine-type peptidase activity
GO:0016021Cellular Componentintegral component of membrane
GO:0016020Cellular Componentmembrane

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms25.480
SRR2545915Juvenile tuber36.170
SRP108465SRR5643513five period of Gastrodia elata22.140
SRR5643514five period of Gastrodia elata27.030
SRR5643515five period of Gastrodia elata23.940
SRR5643524five period of Gastrodia elata29.110
SRR5643525five period of Gastrodia elata25.990
SRR5643528five period of Gastrodia elata32.040
SRR5643658five period of Gastrodia elata25.290
SRR5643659five period of Gastrodia elata28.680
SRR5643660five period of Gastrodia elata28.970
SRR5643661five period of Gastrodia elata25.250
SRR5643662five period of Gastrodia elata29.790
SRR5643663five period of Gastrodia elata32.070
SRR5643664five period of Gastrodia elata27.950
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_121.490
SRR6049655Rhizomagastrodiae_C368-T10_good_116.780
SRR6049656Rhizomagastrodiae_C368-T07_good_126.500
SRR6049657Rhizomagastrodiae_C368-T07_good_117.100
SRR6049658Rhizomagastrodiae_C368-T04_good_119.270
SRR6049659Rhizomagastrodiae_C368-T04_good_120.840
SRR6049660Rhizomagastrodiae_C368-T01_good_124.210
SRR6049661Rhizomagastrodiae_C368-T04_good_125.420
SRR6049662Rhizomagastrodiae_C368-T01_good_123.730
SRR6049663Rhizomagastrodiae_C368-T01_good_120.100
SRR6049664Rhizomagastrodiae_C368-T10_good_131.830
SRR6049665Rhizomagastrodiae_C368-T10_good_131.830
SRP279888GastroGastrodia elata tuber 25.72
JuvenJuvenile tuber19.99
Mother_GastroMother tuber of Gastrodia elata 29.05
Mother_JuvenMother tuber of Juvenile 25.41