Detail information of GWHGAAEX017885/evm.TU.scaffold_88.82
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|304321292|ref|YP_003854935.1| | 2.00E-11 | sterol desaturase [Parvularcula bermudensis HTCC2503] |
| nr | gi|743811623|ref|XP_010929210.1| | 0 | PREDICTED: protein ECERIFERUM 3-like isoform X1 [Elaeis guineensis] |
| Swissprot | tr|Q8H1Z0|CER3_ARATH | 0 | Protein ECERIFERUM 3 |
| trEMBL | tr|D7U1J5|D7U1J5_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CBI36611.3} |
| TAIR | AT5G57800 | 0 | Fatty acid hydroxylase superfamily |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000095 | 2090816 | 2102839 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX017885
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module1 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF04116.12 | FA_hydroxylase | 153 | 293 | 1.70E-22 |
| PF12076.7 | Wax2_C | 473 | 643 | 7.80E-65 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0008610 | Biological Process | lipid biosynthetic process |
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0016491 | Molecular Function | oxidoreductase activity |
| GO:0005506 | Molecular Function | iron ion binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 19.420 |
| SRR2545915 | Juvenile tuber | 24.200 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 24.100 |
| SRR5643514 | five period of Gastrodia elata | 16.140 | |
| SRR5643515 | five period of Gastrodia elata | 9.310 | |
| SRR5643524 | five period of Gastrodia elata | 17.240 | |
| SRR5643525 | five period of Gastrodia elata | 66.240 | |
| SRR5643528 | five period of Gastrodia elata | 48.330 | |
| SRR5643658 | five period of Gastrodia elata | 51.100 | |
| SRR5643659 | five period of Gastrodia elata | 6.400 | |
| SRR5643660 | five period of Gastrodia elata | 5.230 | |
| SRR5643661 | five period of Gastrodia elata | 6.490 | |
| SRR5643662 | five period of Gastrodia elata | 8.750 | |
| SRR5643663 | five period of Gastrodia elata | 8.080 | |
| SRR5643664 | five period of Gastrodia elata | 8.590 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 10.040 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 12.530 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 21.130 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 12.550 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 6.210 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 3.840 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 8.450 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 15.610 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 17.470 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 9.320 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 12.890 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 12.890 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 6.51 |
| Juven | Juvenile tuber | 17.15 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 27.71 | |
| Mother_Juven | Mother tuber of Juvenile | 14.27 |