Detail information of GWHGAAEX017887/evm.TU.scaffold_88.84
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|189502556|ref|YP_001958273.1| | 1.00E-19 | hypothetical protein Aasi_1217 [Candidatus Amoebophilus asiaticus 5a2] |
| nr | gi|743767597|ref|XP_010914066.1| | 0 | PREDICTED: probable E3 ubiquitin-protein ligase XBOS32 [Elaeis guineensis] |
| Swissprot | tr|Q6KAE5|XB32_ORYSJ | 0 | Probable E3 ubiquitin-protein ligase XBOS32 |
| trEMBL | tr|M0SKC5|M0SKC5_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr4P02080_001} |
| TAIR | AT5G07270 | 4.00E-150 | XB3 ortholog 3 in Arabidopsis thaliana |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000095 | 2173836 | 2203728 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX017887
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13637.5 | Ank_4 | 52 | 103 | 1.80E-10 |
| PF00023.29 | Ank | 118 | 138 | 0.0026 |
| PF00023.29 | Ank | 180 | 207 | 0.0095 |
| PF13857.5 | Ank_5 | 222 | 263 | 7.80E-09 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 5.370 |
| SRR2545915 | Juvenile tuber | 5.920 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 4.120 |
| SRR5643514 | five period of Gastrodia elata | 5.390 | |
| SRR5643515 | five period of Gastrodia elata | 5.430 | |
| SRR5643524 | five period of Gastrodia elata | 4.580 | |
| SRR5643525 | five period of Gastrodia elata | 4.560 | |
| SRR5643528 | five period of Gastrodia elata | 4.950 | |
| SRR5643658 | five period of Gastrodia elata | 5.850 | |
| SRR5643659 | five period of Gastrodia elata | 5.050 | |
| SRR5643660 | five period of Gastrodia elata | 4.640 | |
| SRR5643661 | five period of Gastrodia elata | 4.630 | |
| SRR5643662 | five period of Gastrodia elata | 6.080 | |
| SRR5643663 | five period of Gastrodia elata | 5.030 | |
| SRR5643664 | five period of Gastrodia elata | 5.750 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 5.510 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 5.210 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 5.850 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 6.400 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 5.790 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 6.250 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 5.990 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 5.900 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 5.100 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 6.360 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 7.750 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 7.750 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 5.98 |
| Juven | Juvenile tuber | 6.72 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 11.67 | |
| Mother_Juven | Mother tuber of Juvenile | 8.45 |