Gene detail

Detail information of GWHGAAEX017889/evm.TU.scaffold_88.86

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG1107	Membrane coat complex Retromer, subunit VPS35
nr	gi\|743759782\|ref\|XP_010933774.1\|	PREDICTED: vacuolar protein sorting-associated protein 35B-like [Elaeis guineensis]
Swissprot	tr\|F4I0P8\|VP35B_ARATH	Vacuolar protein sorting-associated protein 35B
trEMBL	tr\|M0TZC1\|M0TZC1_MUSAM	Vacuolar protein sorting-associated protein 35 {ECO:0000256\|PIRNR:PIRNR009375}
TAIR	AT1G75850	VPS35 homolog B

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000095	2258121	2310180	+

Transcript Sequence
>GWHTAAEX017889 ATCGTAACTATTATTTTTCACAAAATTATATGTTAAATTGTCTGCAACAAAAAAGTTCCTGGCTTTCTCGTGCGTCAATTCTCGGCCGAAAATTCATTTCGTTGCAATCTTTATTCTGCACAATTTGCACAATTTAGGTGAATGGTATCGATTAAAAGCAAACGTCTTGAGATCGCTTCTAGAGCAGTAGAATCGAGAGGCGAGGTGAGGAAGAGCACCGGCAGTATAGCTTGGGCGGTGTCATCTGACGATTGCGCATAAGATGCTGCAAGACAACGGCGTTGATGATGAGGAGAAATGGTTGGCTGAAGGCATCGCTGGCCTTCAGCACAACGCCTTCTTCATGCACCGCTCTCTTGATTCTAACAATCTGCGTGACGCCCTGAAGTACTCAGCTCAGATGCTCTCCGAACTTCGCACCTCCAGACTCTCGCCCCACAAATATTACGAGCTCTATATGAGGGCTTTCGATGAACTGAGGAAGCTTGAGTTGTTCTTCAAGGATGAGACCAAGAGGGGATGCTCGGTGATTGATCTCTACGAACTTGTGCAGCATGCTGGGAACATCCTGCCTAGACTGTATCTTCTTTGTACGGTAGGATCTGTTTATATAAAGTCAAAAGAAGCCCCAGCAAAAGACATCCTTAAGGATCTTGTTGAAATGTGTCGTGGTATACAACATCCTGTTCGTGGTCTCTTCTTGAGGAGTTACCTTTCTCAGATCAGCCGGGATAAGTTGCCTGATATTGGTTCAGAGTATGAAGGGGATGGTGATAATGTTATTGACGCTGTTGAATTTGTGCTTCAGAACTTTACTGAGATGAATAAACTATGGGTCCGAATGCATTATCAGGGACCTGTTCGGGAAAAAGATAAACGTGTAAAAGAACGGAGTGAGCTCCGAGATCTTGTGGGCAAAAATCTCCATGTTCTTAGCCAAATAGATGGTATTGATCTTGATATGTACAAAGAAATTGTGCTTCCCAGGGTATTAGAGCAGGTGGTCAATTGCAAAGATGAACTGGCCCAACATTATTTGATGGATTGCATTATTCAAGTGTTTCCTGATGAATATCATTTACAGAGTCTCGAATTATTATTAGGTGCTTGCCCGCAACTTCAGCCCACTGTTGACATCATGACAGTTCTATCTCAGCTTATGGAGAGGTTGTCAAATTATGCTGTCTCTAGTACTGAGGTTTTACCGGAATTTCTGCAAGTAGAAGCTTTTGCTAAATTGAGCAATTCAATTGGAAAGGTCATTGATTCACAGCCTGAAATGCCAATTTTTGGTTCCATTGCTTTATACGTCTCTCTTCTTACGTTTACACTTCGGGTCCACCCAGATCGTCTTGATTATGTGGATCAAGTTCTGGGATCCTGTGTTAAGAAAATTTCAGGAAAACCAAAGATTGAGGATAGCAAAGCAATCAAACAAATAGTTGCCCTTTTAAGTGCGCCAGTAGAAAAGTACAATGACATAGATACAGCGTTAAAGCTCTCTAACTATCCAAGAGTCATGGATCACCTTGATAATGCAACTAAGAAAGTCATGGCAGTGGTTATTATTCAAAGCATCATGAAGAACAATACCTGCATATCTACTGCTGATAAGGTTGAGGCATTGTTCGAGTTAATAAAAGGGCTCATCAAAGATATGGATGTAACCCAAGATGAGGAGCTTGATGAAGAGGATTTTAAAGAGGAGCAAAATTCAGTTGCTCGCCTGATTCACATGTTATACAATGATGATCCAGTAGAGATGCTGGAGATTATTTGTACAGTGAGGAAGCATATTCTTCTTGGTGGACCTAAACGCCTTGCTTTCACTGTTCCTCCCTTTATATTTTTTGCACTTAAGCTTGTTAGACGCTTGCAAGGTCAGGAAGGGGACGTGGACAGTGAAGATGCTCCTTCTACTCCCAAGAAAATATTTAGGATATTGAATCAAACCATTGAGGCATTATCATCCGTTCCTTCACCTGAACTTGCCTTGAGGTTGTACTTGCAATGTGCAGAGGCTGCTAATGATTGTGATCTTGAATCTGTTGCATATGAGTTTTTCACACAAGCTTTTATATTATATGAAGAAGAAGTAGCTGAGTCCAAAGCTCAAGTGACCGCAATTCACCTAATTATTGGGAGTCTTCAGAGGATGAATGTATTTGGTGTTGAGAACAGAGATACACTAACCCATAAGGCCACAGGATATTCTGCTAAGCTTTTGAAAAAGCCTGATCAGTGCAGTGCAGTTTATGCTTGCTCGCACCTCTTTTGGGTTGATGATCAAGATGGTGCTAAGGATGGAGAAAGGGTTCTGCTGTGCCTAAAGCGTGCCATAAGGATTGCCAACGCCGCACAGCAAATGGCTAGTGATACAAGGGGTAGCAGCGGACCTGTCACTCTGTTTGTGGAAATACTAAACAAGTATCTTTATTTCTTTGAGAAAGGGAACCCTCAGATAACTAGCTCAGCAATTAACGGTGTGATCGACCTGATCGTGTCCGATATGCAAAGTGATGGCTCGACTTCCGCTCCATCCGCCGATGCCTTCTTTTCCAGCACGCTTAGATATATTCAATTTCAGAAGCAGAAAGGCGGCCCCATCGGCGAGAAGTACGAACCGATCAAGATACCTATGTAGATTTCTCTGTTGATTTTCATTTTTGGATCTCTGTTGGGTTTTAATAGAAATAAAAAATTTGTAAATCTGTTATGATTTTTGCATTTATTTGCCAGTCCCTGTATGCCT

Network for GWHGAAEX017889

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03635.16	Vps35	13	747	2.70E-276

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K18468	VPS35	Endocytosis	map04144

Gene Ontology

GO term	Ontology	Name
GO:0042147	Biological Process	retrograde transport, endosome to Golgi
GO:0015031	Biological Process	protein transport
GO:0030906	Cellular Component	retromer, cargo-selective complex

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	77.970
SRP064423	SRR2545915	Juvenile tuber	83.530
SRP108465	SRR5643513	five period of Gastrodia elata	54.420
	SRR5643514	five period of Gastrodia elata	65.480
	SRR5643515	five period of Gastrodia elata	53.850
	SRR5643524	five period of Gastrodia elata	61.770
	SRR5643525	five period of Gastrodia elata	52.780
	SRR5643528	five period of Gastrodia elata	47.200
	SRR5643658	five period of Gastrodia elata	58.930
	SRR5643659	five period of Gastrodia elata	48.280
	SRR5643660	five period of Gastrodia elata	52.260
	SRR5643661	five period of Gastrodia elata	48.110
	SRR5643662	five period of Gastrodia elata	54.030
	SRR5643663	five period of Gastrodia elata	55.370
	SRR5643664	five period of Gastrodia elata	57.780
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	65.180
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	81.490
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	68.740
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	67.890
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	80.070
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	91.360
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	73.830
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	77.660
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	69.480
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	73.840
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	69.630
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	69.630
SRP279888	Gastro	Gastrodia elata tuber	76.73
	Juven	Juvenile tuber	71.93
	Mother_Gastro	Mother tuber of Gastrodia elata	60.54
	Mother_Juven	Mother tuber of Juvenile	65.57