Gene detail

Detail information of GWHGAAEX017891/evm.TU.scaffold_88.88

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG2110	9.00E-117	Uncharacterized conserved protein, contains WD40 repeats
nr	gi\|672141140\|ref\|XP_008794389.1\|	0	PREDICTED: autophagy-related protein 18b isoform X1 [Phoenix dactylifera]
Swissprot	tr\|Q8H1Q8\|AT18B_ARATH	7.00E-160	Autophagy-related protein 18b
trEMBL	tr\|M0U001\|M0U001_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr9P13430_001}
TAIR	AT4G30510	9.00E-117	homolog of yeast autophagy 18 (ATG18) B

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000095	2372741	2455149	-

Transcript Sequence
>GWHTAAEX017891 TGCGAATACATAAGTGGATTGCACTAGGCGCACCCATTTTCTAATTTTCTAATCAAATTGCCATTCCTTGCTTATTACTTTGGAAGTCAAGCTTTTTCACACTCAATTCCGATGGCCGCTTCGTCGTCATCCTCTTCTAACCACGACTCTCGTATTCTCTGCGCTTCCTTCAACCAAGATAGCAGTTGCTTCGCAATTGGTACCAAGGATGGGTTTAGGCTTTTCGATGCGCGGAGCGGAAGGCTGCGCTACGAGAGAGCTATTGGTGCATTTAGCATTGTTGAAATGCTGTTCAGCACAAGCCTCGTTGCTATAGTTGGAGCAGGGGAACAGTCATTATTATCGCCACGTCGTCTTTGTCTCTTCAATTTTGTCACTGGCAGTGCACTTCGAGAACTGAATTTTTTGACCATCATCCTAGCAGTTCGTTTAAATCGGAAAAGACTAATTGTTGTGTTGCAGGAGAAGACGTATATTTATGATGTTAACAGCCTTGCTATCCTTGATACAATTGATACCGTGCCAAATAACAAAGGGCTATGCGCATTTTCTCCTAATTCAGAAGCATGTTTGTTAGCCCTTCCAGCAAGTACGACTAAAGGATCTGTTATAGTGTACAGTACGTTGGAGCTTCAATCACTTTGCCAGATTGATGCTCATCGTTCCCCTTTAGCTGCAATTGTCTTCTCTTCAAATGGCATGTATCTAGCAACAGCATCTGAGCAGGGAACAATAATCAGAGTGCATCTAGTCTCACAAGCAACCAAGTCATATAGCTTGCGTAGAGGGTCATATCCCTCAATCATTTACTCATTATCATTTGGGCCATCTGTGGGCTTGCCAGATATTCTTGTGGGTACTAGCTTATCAGGATCATTGCATGCATTTTCTCTTGAACCTATTATTAAACAAAGAGACCGAAGACCAAACAAGCTAATTGGTTCAATATTCCCTGAGCCAATCAATGATGCTTTTGAGTCATCTTATCACCATGTTGTTCACAAAGCATCTCTTGCAGGAGTCAAAAGCTATGTGACGATATCAAGCACAGACAAGGTTCAAAGCACCTCCCCAAACTCTACTCTACGGTCGAATGTCTACATTATCACAGGCAACGGTCACTTCTACAACTACACCTTAGACATCACTAGCTCAAATGAATTATCTTGGAGTCTACAATCAGAATTCAATCTGATAGATACAGCTGCCGAAGATCCCTGATTTGATTTGGATTTGATGCCGATCTAATTATTCAACGTTCTGTGCATTTTTTTAAAGCAAACAAGCTTTATGATTTTCAATGGCGATAATTATGTATATAAAATGTACAATATTATTGAAGCAGCTACCTTTAATGACATATTTTATTGATACTCTGTTGTTTATTTTCAGTAAAATGTTTAATAACTTCAATTAATT

Network for GWHGAAEX017891

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module1

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K17908	WIPI1_2, ATG18	Autophagy - animal	map04140
		Autophagy - yeast	map04138
		Autophagy - other	map04136

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	22.520
SRP064423	SRR2545915	Juvenile tuber	14.510
SRP108465	SRR5643513	five period of Gastrodia elata	5.970
	SRR5643514	five period of Gastrodia elata	7.170
	SRR5643515	five period of Gastrodia elata	7.910
	SRR5643524	five period of Gastrodia elata	7.560
	SRR5643525	five period of Gastrodia elata	11.750
	SRR5643528	five period of Gastrodia elata	16.840
	SRR5643658	five period of Gastrodia elata	22.860
	SRR5643659	five period of Gastrodia elata	4.540
	SRR5643660	five period of Gastrodia elata	3.390
	SRR5643661	five period of Gastrodia elata	4.830
	SRR5643662	five period of Gastrodia elata	4.530
	SRR5643663	five period of Gastrodia elata	5.340
	SRR5643664	five period of Gastrodia elata	4.840
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	6.480
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	12.520
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	8.370
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	6.700
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	10.340
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	10.450
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	7.980
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	7.800
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	5.730
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	9.110
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	8.500
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	8.500
SRP279888	Gastro	Gastrodia elata tuber	6.27
	Juven	Juvenile tuber	5.42
	Mother_Gastro	Mother tuber of Gastrodia elata	16.40
	Mother_Juven	Mother tuber of Juvenile	11.15