Detail information of GWHGAAEX017892/evm.TU.scaffold_88.89
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|283781652|ref|YP_003372407.1| | 7.00E-21 | serine/threonine protein kinase [Pirellula staleyi DSM 6068] |
| nr | gi|695058291|ref|XP_009417455.1| | 0 | PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At2g23950 [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q0WVM4|Y2239_ARATH | 0 | Probable LRR receptor-like serine/threonine-protein kinase At2g23950 (Precursor) |
| trEMBL | tr|M0U000|M0U000_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr9P13420_001} |
| TAIR | AT5G16000 | 0 | NSP-interacting kinase 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000095 | 2486419 | 2501283 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX017892
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF08263.11 | LRRNT_2 | 113 | 152 | 9.90E-12 |
| PF00069.24 | Pkinase | 390 | 650 | 3.90E-39 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | RLK-Pelle_LRR-II |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006468 | Biological Process | protein phosphorylation |
| GO:0004672 | Molecular Function | protein kinase activity |
| GO:0005524 | Molecular Function | ATP binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.810 |
| SRR2545915 | Juvenile tuber | 0.940 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 6.250 |
| SRR5643514 | five period of Gastrodia elata | 7.200 | |
| SRR5643515 | five period of Gastrodia elata | 5.460 | |
| SRR5643524 | five period of Gastrodia elata | 5.760 | |
| SRR5643525 | five period of Gastrodia elata | 3.540 | |
| SRR5643528 | five period of Gastrodia elata | 1.730 | |
| SRR5643658 | five period of Gastrodia elata | 1.440 | |
| SRR5643659 | five period of Gastrodia elata | 5.930 | |
| SRR5643660 | five period of Gastrodia elata | 4.640 | |
| SRR5643661 | five period of Gastrodia elata | 4.570 | |
| SRR5643662 | five period of Gastrodia elata | 4.030 | |
| SRR5643663 | five period of Gastrodia elata | 2.910 | |
| SRR5643664 | five period of Gastrodia elata | 4.260 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 5.190 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 5.060 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 5.510 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 3.400 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 6.270 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 4.710 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 6.660 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 5.440 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 8.990 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 9.090 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 7.240 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 7.240 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 1.83 |
| Juven | Juvenile tuber | 2.70 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 4.08 | |
| Mother_Juven | Mother tuber of Juvenile | 2.20 |