Detail information of GWHGAAEX017895/evm.TU.scaffold_88.91
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 0 | FOG: PPR repeat |
| nr | gi|743845187|ref|XP_010938520.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At1g77360, mitochondrial-like [Elaeis guineensis] |
| Swissprot | tr|Q9FVX2|PP129_ARATH | 0 | Pentatricopeptide repeat-containing protein At1g77360, mitochondrial (Precursor) |
| trEMBL | tr|M5XUV0|M5XUV0_PRUPE | 0 | Uncharacterized protein {ECO:0000313|EMBL:EMJ25423.1} |
| TAIR | AT1G77360 | 0 | Tetratricopeptide repeat (TPR)-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000095 | 2605290 | 2607414 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX017895
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 134 | 163 | 0.94 |
| PF13041.5 | PPR_2 | 165 | 210 | 8.40E-12 |
| PF12854.6 | PPR_1 | 231 | 262 | 1.60E-08 |
| PF01535.19 | PPR | 270 | 299 | 2.50E-06 |
| PF13041.5 | PPR_2 | 301 | 348 | 1.90E-14 |
| PF13041.5 | PPR_2 | 370 | 418 | 4.40E-13 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 2.510 |
| SRR2545915 | Juvenile tuber | 3.470 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 5.000 |
| SRR5643514 | five period of Gastrodia elata | 4.090 | |
| SRR5643515 | five period of Gastrodia elata | 1.890 | |
| SRR5643524 | five period of Gastrodia elata | 3.330 | |
| SRR5643525 | five period of Gastrodia elata | 1.900 | |
| SRR5643528 | five period of Gastrodia elata | 1.630 | |
| SRR5643658 | five period of Gastrodia elata | 0.980 | |
| SRR5643659 | five period of Gastrodia elata | 2.980 | |
| SRR5643660 | five period of Gastrodia elata | 2.950 | |
| SRR5643661 | five period of Gastrodia elata | 3.140 | |
| SRR5643662 | five period of Gastrodia elata | 4.870 | |
| SRR5643663 | five period of Gastrodia elata | 3.690 | |
| SRR5643664 | five period of Gastrodia elata | 2.770 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 3.490 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 5.460 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 4.070 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 3.070 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 3.440 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 2.840 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 3.900 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 4.080 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 6.010 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 4.770 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 6.750 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 6.750 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 4.53 |
| Juven | Juvenile tuber | 2.34 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 1.93 | |
| Mother_Juven | Mother tuber of Juvenile | 1.07 |