Detail information of GWHGAAEX017898/evm.TU.scaffold_88.96
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| nr | gi|743818032|ref|XP_011020562.1| | 1.95E-155 | PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060 isoform X1 [Populus euphratica] |
| Swissprot | tr|Q94AN4|AP2L1_ARATH | 1.00E-115 | AP2-like ethylene-responsive transcription factor At1g16060 |
| trEMBL | tr|A0A061G9U9|A0A061G9U9_THECC | 3.00E-151 | AP2 domain-containing transcription factor, putative {ECO:0000313|EMBL:EOY26153.1} |
| TAIR | AT1G16060 | 2.00E-110 | ARIA-interacting double AP2 domain protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000095 | 2759416 | 2773204 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX017898
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00847.19 | AP2 | 49 | 108 | 1.40E-11 |
| PF00847.19 | AP2 | 151 | 202 | 7.70E-12 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | AP2/ERF-AP2 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.180 |
| SRR2545915 | Juvenile tuber | 0.210 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 19.400 |
| SRR5643514 | five period of Gastrodia elata | 24.120 | |
| SRR5643515 | five period of Gastrodia elata | 13.050 | |
| SRR5643524 | five period of Gastrodia elata | 17.600 | |
| SRR5643525 | five period of Gastrodia elata | 0.060 | |
| SRR5643528 | five period of Gastrodia elata | 0.000 | |
| SRR5643658 | five period of Gastrodia elata | 0.100 | |
| SRR5643659 | five period of Gastrodia elata | 0.050 | |
| SRR5643660 | five period of Gastrodia elata | 0.110 | |
| SRR5643661 | five period of Gastrodia elata | 0.060 | |
| SRR5643662 | five period of Gastrodia elata | 0.000 | |
| SRR5643663 | five period of Gastrodia elata | 0.000 | |
| SRR5643664 | five period of Gastrodia elata | 0.050 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 28.410 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 50.290 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 42.270 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 12.910 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 31.590 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 20.590 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 10.770 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 13.810 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 27.870 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 29.420 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 71.110 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 71.110 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.02 |
| Juven | Juvenile tuber | 0.16 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 6.41 | |
| Mother_Juven | Mother tuber of Juvenile | 0.97 |