Detail information of GWHGAAEX017901/evm.TU.scaffold_88.99
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|218779469|ref|YP_002430787.1| | 3.00E-28 | peptidase S10 serine carboxypeptidase [Desulfatibacillum alkenivorans AK-01] |
| KOG | KOG1282 | 6.00E-176 | Serine carboxypeptidases (lysosomal cathepsin A) |
| nr | gi|672133060|ref|XP_008790132.1| | 0 | PREDICTED: serine carboxypeptidase II-2 isoform X1 [Phoenix dactylifera] |
| Swissprot | tr|P55748|CBP22_HORVU | 0 | Serine carboxypeptidase II-2 chain B (Precursor; Fragment) |
| trEMBL | tr|M0TIY0|M0TIY0_MUSAM | 0 | Carboxypeptidase {ECO:0000256|RuleBase:RU361156} |
| TAIR | AT2G35780 | 6.00E-176 | serine carboxypeptidase-like 26 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000095 | 2864330 | 2889406 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX017901
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module1 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00450.21 | Peptidase_S10 | 46 | 462 | 5.60E-139 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006508 | Biological Process | proteolysis |
| GO:0004185 | Molecular Function | serine-type carboxypeptidase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 33.910 |
| SRR2545915 | Juvenile tuber | 46.940 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 82.540 |
| SRR5643514 | five period of Gastrodia elata | 117.120 | |
| SRR5643515 | five period of Gastrodia elata | 87.990 | |
| SRR5643524 | five period of Gastrodia elata | 110.050 | |
| SRR5643525 | five period of Gastrodia elata | 102.450 | |
| SRR5643528 | five period of Gastrodia elata | 106.410 | |
| SRR5643658 | five period of Gastrodia elata | 144.480 | |
| SRR5643659 | five period of Gastrodia elata | 45.060 | |
| SRR5643660 | five period of Gastrodia elata | 47.900 | |
| SRR5643661 | five period of Gastrodia elata | 51.550 | |
| SRR5643662 | five period of Gastrodia elata | 49.690 | |
| SRR5643663 | five period of Gastrodia elata | 48.190 | |
| SRR5643664 | five period of Gastrodia elata | 49.650 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 52.870 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 66.230 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 67.400 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 42.680 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 36.200 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 36.210 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 34.720 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 29.520 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 58.230 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 54.380 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 97.280 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 97.280 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 37.37 |
| Juven | Juvenile tuber | 55.78 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 31.93 | |
| Mother_Juven | Mother tuber of Juvenile | 31.26 |