Detail information of GWHGAAEX017902/evm.TU.scaffold_88.100
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG0151 | 0 | Predicted splicing regulator, contains RRM, SWAP and RPR domains |
| nr | gi|720056595|ref|XP_010273722.1| | 0 | PREDICTED: U2 snRNP-associated SURP motif-containing protein-like isoform X2 [Nelumbo nucifera] |
| Swissprot | tr|Q9LEB3|RBP47_NICPL | 2.00E-09 | Polyadenylate-binding protein RBP47 |
| trEMBL | tr|F6H346|F6H346_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CCB46875.1} |
| TAIR | AT5G25060 | 0 | RNA recognition motif (RRM)-containing protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000095 | 2890862 | 2957052 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX017902
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00076.21 | RRM_1 | 187 | 259 | 6.00E-12 |
| PF01805.19 | Surp | 332 | 384 | 2.50E-13 |
| PF08312.11 | cwf21 | 818 | 862 | 7.70E-09 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K12842 | SR140 | Spliceosome | map03040 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006396 | Biological Process | RNA processing |
| GO:0003723 | Molecular Function | RNA binding |
| GO:0003676 | Molecular Function | nucleic acid binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 37.750 |
| SRR2545915 | Juvenile tuber | 34.400 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 41.330 |
| SRR5643514 | five period of Gastrodia elata | 39.800 | |
| SRR5643515 | five period of Gastrodia elata | 37.550 | |
| SRR5643524 | five period of Gastrodia elata | 40.360 | |
| SRR5643525 | five period of Gastrodia elata | 31.740 | |
| SRR5643528 | five period of Gastrodia elata | 29.830 | |
| SRR5643658 | five period of Gastrodia elata | 34.950 | |
| SRR5643659 | five period of Gastrodia elata | 38.180 | |
| SRR5643660 | five period of Gastrodia elata | 37.360 | |
| SRR5643661 | five period of Gastrodia elata | 42.040 | |
| SRR5643662 | five period of Gastrodia elata | 34.320 | |
| SRR5643663 | five period of Gastrodia elata | 35.320 | |
| SRR5643664 | five period of Gastrodia elata | 37.210 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 34.650 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 30.560 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 32.970 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 37.260 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 35.120 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 35.280 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 36.820 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 33.920 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 31.660 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 30.650 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 35.070 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 35.070 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 38.81 |
| Juven | Juvenile tuber | 56.94 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 48.31 | |
| Mother_Juven | Mother tuber of Juvenile | 63.76 |