Detail information of GWHGAAEX017906/evm.TU.scaffold_88.105
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|343085920|ref|YP_004775215.1| | 2.00E-51 | RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745] |
| nr | gi|695044088|ref|XP_009409775.1| | 0 | PREDICTED: putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g24130 [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q9ZUI0|Y2241_ARATH | 0 | Putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g24130 (Precursor) |
| trEMBL | tr|I1Q051|I1Q051_ORYGL | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:ORGLA06G0051400.1} |
| TAIR | AT2G24130 | 0 | Leucine-rich receptor-like protein kinase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000095 | 3080975 | 3086094 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX017906
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF08263.11 | LRRNT_2 | 23 | 59 | 2.70E-08 |
| PF00560.32 | LRR_1 | 89 | 110 | 0.87 |
| PF13855.5 | LRR_8 | 190 | 249 | 1.10E-09 |
| PF13855.5 | LRR_8 | 293 | 350 | 8.20E-08 |
| PF13516.5 | LRR_6 | 408 | 424 | 0.98 |
| PF13855.5 | LRR_8 | 486 | 544 | 8.80E-10 |
| PF00069.24 | Pkinase | 660 | 959 | 6.30E-39 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | RLK-Pelle_LRR-XII-1 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006468 | Biological Process | protein phosphorylation |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0005515 | Molecular Function | protein binding |
| GO:0004672 | Molecular Function | protein kinase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.000 |
| SRR2545915 | Juvenile tuber | 0.030 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 0.440 |
| SRR5643514 | five period of Gastrodia elata | 0.440 | |
| SRR5643515 | five period of Gastrodia elata | 0.270 | |
| SRR5643524 | five period of Gastrodia elata | 0.530 | |
| SRR5643525 | five period of Gastrodia elata | 0.000 | |
| SRR5643528 | five period of Gastrodia elata | 0.300 | |
| SRR5643658 | five period of Gastrodia elata | 0.390 | |
| SRR5643659 | five period of Gastrodia elata | 0.060 | |
| SRR5643660 | five period of Gastrodia elata | 0.020 | |
| SRR5643661 | five period of Gastrodia elata | 0.020 | |
| SRR5643662 | five period of Gastrodia elata | 0.000 | |
| SRR5643663 | five period of Gastrodia elata | 0.000 | |
| SRR5643664 | five period of Gastrodia elata | 0.020 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 0.160 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 0.450 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 0.320 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 0.300 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 0.040 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.000 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 0.210 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 0.110 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 0.610 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 0.540 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 0.630 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 0.630 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.05 |
| Juven | Juvenile tuber | 0.42 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.15 | |
| Mother_Juven | Mother tuber of Juvenile | 0.41 |