Detail information of GWHGAAEX017909/evm.TU.scaffold_88.108
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 0 | FOG: PPR repeat |
| nr | gi|672141106|ref|XP_008794371.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At2g03380, mitochondrial [Phoenix dactylifera] |
| Swissprot | tr|Q9ZQ74|PP146_ARATH | 0 | Pentatricopeptide repeat-containing protein At2g03380, mitochondrial (Precursor) |
| trEMBL | tr|A0A067L9V5|A0A067L9V5_JATCU | 0 | Uncharacterized protein {ECO:0000313|EMBL:KDP41265.1} |
| TAIR | AT2G03380 | 0 | Pentatricopeptide repeat (PPR) superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000095 | 3192850 | 3199921 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX017909
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 121 | 145 | 0.17 |
| PF01535.19 | PPR | 191 | 212 | 0.0019 |
| PF13041.5 | PPR_2 | 220 | 264 | 3.00E-07 |
| PF01535.19 | PPR | 293 | 315 | 0.21 |
| PF01535.19 | PPR | 321 | 344 | 0.0023 |
| PF13041.5 | PPR_2 | 419 | 458 | 1.10E-10 |
| PF01535.19 | PPR | 495 | 520 | 0.0099 |
| PF01535.19 | PPR | 523 | 550 | 0.062 |
| PF01535.19 | PPR | 559 | 586 | 0.025 |
| PF01535.19 | PPR | 597 | 621 | 0.0062 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.880 |
| SRR2545915 | Juvenile tuber | 0.900 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 1.380 |
| SRR5643514 | five period of Gastrodia elata | 0.990 | |
| SRR5643515 | five period of Gastrodia elata | 0.860 | |
| SRR5643524 | five period of Gastrodia elata | 0.880 | |
| SRR5643525 | five period of Gastrodia elata | 0.210 | |
| SRR5643528 | five period of Gastrodia elata | 0.190 | |
| SRR5643658 | five period of Gastrodia elata | 0.100 | |
| SRR5643659 | five period of Gastrodia elata | 1.600 | |
| SRR5643660 | five period of Gastrodia elata | 1.810 | |
| SRR5643661 | five period of Gastrodia elata | 1.720 | |
| SRR5643662 | five period of Gastrodia elata | 1.900 | |
| SRR5643663 | five period of Gastrodia elata | 1.370 | |
| SRR5643664 | five period of Gastrodia elata | 1.660 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 0.840 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 0.450 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 1.130 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 0.790 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 1.490 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 1.340 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 1.300 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 1.240 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 2.050 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 1.460 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 1.720 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 1.720 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 1.63 |
| Juven | Juvenile tuber | 0.76 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.23 | |
| Mother_Juven | Mother tuber of Juvenile | 0.22 |