Detail information of GWHGAAEX017914/evm.TU.scaffold_88.114
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|568285512|ref|YP_008973723.1| | 4.00E-18 | glutamine ABC transporter substrate-binding protein [Leisingera methylohalidivorans DSM 14336] |
| KOG | KOG1052 | 0 | Glutamate-gated kainate-type ion channel receptor subunit GluR5 and related subunits |
| nr | gi|743767667|ref|XP_010914102.1| | 0 | PREDICTED: glutamate receptor 2.7-like [Elaeis guineensis] |
| Swissprot | tr|Q9C5V5|GLR28_ARATH | 0 | Glutamate receptor 2.8 (Precursor) |
| trEMBL | tr|N1QQU6|N1QQU6_AEGTA | 0 | Glutamate receptor {ECO:0000256|PIRNR:PIRNR037090} |
| TAIR | AT2G29100 | 0 | glutamate receptor 2.9 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000095 | 3318514 | 3324783 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX017914
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01094.27 | ANF_receptor | 72 | 421 | 9.50E-66 |
| PF00497.19 | SBP_bac_3 | 492 | 812 | 8.40E-20 |
| PF00060.25 | Lig_chan | 596 | 845 | 2.40E-33 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0015276 | Molecular Function | ligand-gated ion channel activity |
| GO:0016020 | Cellular Component | membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 13.120 |
| SRR2545915 | Juvenile tuber | 18.730 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 33.400 |
| SRR5643514 | five period of Gastrodia elata | 25.490 | |
| SRR5643515 | five period of Gastrodia elata | 70.970 | |
| SRR5643524 | five period of Gastrodia elata | 40.580 | |
| SRR5643525 | five period of Gastrodia elata | 20.200 | |
| SRR5643528 | five period of Gastrodia elata | 66.440 | |
| SRR5643658 | five period of Gastrodia elata | 21.990 | |
| SRR5643659 | five period of Gastrodia elata | 52.700 | |
| SRR5643660 | five period of Gastrodia elata | 31.400 | |
| SRR5643661 | five period of Gastrodia elata | 53.410 | |
| SRR5643662 | five period of Gastrodia elata | 57.000 | |
| SRR5643663 | five period of Gastrodia elata | 38.160 | |
| SRR5643664 | five period of Gastrodia elata | 40.040 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 25.380 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 20.540 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 20.780 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 19.210 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 11.210 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 15.260 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 38.290 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 17.870 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 40.220 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 57.830 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 21.080 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 21.080 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 16.92 |
| Juven | Juvenile tuber | 15.85 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 93.96 | |
| Mother_Juven | Mother tuber of Juvenile | 40.72 |