Detail information of GWHGAAEX017915/evm.TU.scaffold_88.115


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|16081975|ref|NP_394385.1|2.00E-06hypothetical protein Ta0927 [Thermoplasma acidophilum DSM 1728]
KOGKOG17742.00E-44Small nuclear ribonucleoprotein E
nrgi|672117791|ref|XP_008782085.1|9.63E-46PREDICTED: small nuclear ribonucleoprotein E-like [Phoenix dactylifera]
trEMBLtr|U5CXU7|U5CXU7_AMBTC7.00E-46Uncharacterized protein {ECO:0000313|EMBL:ERN14795.1}
TAIRAT2G187402.00E-44Small nuclear ribonucleoprotein family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000009533259873338337+
Transcript Sequence

Network for GWHGAAEX017915

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01423.21LSM20798.10E-12
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K11097SNRPE, SME Spliceosome map03040

Gene Ontology

GO term OntologyName
GO:0000398Biological ProcessmRNA splicing, via spliceosome
GO:0005681Cellular Componentspliceosomal complex

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms62.770
SRR2545915Juvenile tuber66.030
SRP108465SRR5643513five period of Gastrodia elata27.660
SRR5643514five period of Gastrodia elata23.000
SRR5643515five period of Gastrodia elata17.340
SRR5643524five period of Gastrodia elata22.270
SRR5643525five period of Gastrodia elata11.640
SRR5643528five period of Gastrodia elata11.390
SRR5643658five period of Gastrodia elata10.280
SRR5643659five period of Gastrodia elata27.340
SRR5643660five period of Gastrodia elata26.870
SRR5643661five period of Gastrodia elata24.980
SRR5643662five period of Gastrodia elata19.230
SRR5643663five period of Gastrodia elata27.050
SRR5643664five period of Gastrodia elata26.400
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_139.490
SRR6049655Rhizomagastrodiae_C368-T10_good_14.150
SRR6049656Rhizomagastrodiae_C368-T07_good_141.770
SRR6049657Rhizomagastrodiae_C368-T07_good_130.860
SRR6049658Rhizomagastrodiae_C368-T04_good_140.200
SRR6049659Rhizomagastrodiae_C368-T04_good_142.340
SRR6049660Rhizomagastrodiae_C368-T01_good_139.300
SRR6049661Rhizomagastrodiae_C368-T04_good_133.600
SRR6049662Rhizomagastrodiae_C368-T01_good_143.160
SRR6049663Rhizomagastrodiae_C368-T01_good_148.210
SRR6049664Rhizomagastrodiae_C368-T10_good_142.970
SRR6049665Rhizomagastrodiae_C368-T10_good_142.970
SRP279888GastroGastrodia elata tuber 26.32
JuvenJuvenile tuber41.37
Mother_GastroMother tuber of Gastrodia elata 22.08
Mother_JuvenMother tuber of Juvenile 27.43