Detail information of GWHGAAEX017916/evm.TU.scaffold_88.116


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG16015.00E-69GATA-4/5/6 transcription factors
nrgi|312063743|gb|ADQ27228.1|2.26E-102CONSTANS-like protein [Cymbidium goeringii]
Swissprottr|Q9SK53|COL3_ARATH1.00E-69Zinc finger protein CONSTANS-LIKE 3
trEMBLtr|K7N8D0|K7N8D0_9ASPA8.00E-103CONSTANS-like protein {ECO:0000313|EMBL:ADQ27228.1}
TAIRAT2G247905.00E-69CONSTANS-like 3

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000009533409243342640-
Transcript Sequence

Network for GWHGAAEX017916

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00643.23zf-B_box18591.40E-07
PF00643.23zf-B_box591045.00E-06
PF06203.13CCT2062484.90E-18
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyC2C2-CO-like

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0008270Molecular Functionzinc ion binding
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms5.950
SRR2545915Juvenile tuber8.470
SRP108465SRR5643513five period of Gastrodia elata17.330
SRR5643514five period of Gastrodia elata15.460
SRR5643515five period of Gastrodia elata15.810
SRR5643524five period of Gastrodia elata15.430
SRR5643525five period of Gastrodia elata33.160
SRR5643528five period of Gastrodia elata17.770
SRR5643658five period of Gastrodia elata45.190
SRR5643659five period of Gastrodia elata18.360
SRR5643660five period of Gastrodia elata17.230
SRR5643661five period of Gastrodia elata22.650
SRR5643662five period of Gastrodia elata23.710
SRR5643663five period of Gastrodia elata21.880
SRR5643664five period of Gastrodia elata12.510
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_114.870
SRR6049655Rhizomagastrodiae_C368-T10_good_121.590
SRR6049656Rhizomagastrodiae_C368-T07_good_115.740
SRR6049657Rhizomagastrodiae_C368-T07_good_117.670
SRR6049658Rhizomagastrodiae_C368-T04_good_118.090
SRR6049659Rhizomagastrodiae_C368-T04_good_121.210
SRR6049660Rhizomagastrodiae_C368-T01_good_114.350
SRR6049661Rhizomagastrodiae_C368-T04_good_116.440
SRR6049662Rhizomagastrodiae_C368-T01_good_114.860
SRR6049663Rhizomagastrodiae_C368-T01_good_112.760
SRR6049664Rhizomagastrodiae_C368-T10_good_115.700
SRR6049665Rhizomagastrodiae_C368-T10_good_115.700
SRP279888GastroGastrodia elata tuber 14.84
JuvenJuvenile tuber16.91
Mother_GastroMother tuber of Gastrodia elata 21.91
Mother_JuvenMother tuber of Juvenile 14.77