Detail information of GWHGAAEX017924/evm.TU.scaffold_88.126


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|268317750|ref|YP_003291469.1|9.00E-131AMP-dependent synthetase and ligase [Rhodothermus marinus DSM 4252]
KOGKOG11760Acyl-CoA synthetase
nrgi|544590485|gb|AGW24660.1|04-coumarate:coenzyme A ligase [Ornithogalum saundersiae]
Swissprottr|Q6ETN3|4CL3_ORYSJ0Probable 4-coumarate--CoA ligase 3
trEMBLtr|U3N732|U3N732_9ASPA04-coumarate:coenzyme A ligase {ECO:0000313|EMBL:AGW24660.1}
TAIRAT3G2124004-coumarate:CoA ligase 2

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000009537574663762411+
Transcript Sequence

Network for GWHGAAEX017924

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module1

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00501.27AMP-binding374404.70E-110
PF13193.5AMP-binding_C4495241.00E-15
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K019044CL Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Ubiquinone and other terpenoid-quinone biosynthesismap00130
Phenylpropanoid biosynthesismap00940

Gene Ontology

GO term OntologyName
GO:0003824Molecular Functioncatalytic activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms25.380
SRR2545915Juvenile tuber90.620
SRP108465SRR5643513five period of Gastrodia elata95.490
SRR5643514five period of Gastrodia elata137.510
SRR5643515five period of Gastrodia elata211.330
SRR5643524five period of Gastrodia elata177.530
SRR5643525five period of Gastrodia elata1002.170
SRR5643528five period of Gastrodia elata609.860
SRR5643658five period of Gastrodia elata1354.570
SRR5643659five period of Gastrodia elata36.090
SRR5643660five period of Gastrodia elata37.700
SRR5643661five period of Gastrodia elata52.200
SRR5643662five period of Gastrodia elata29.330
SRR5643663five period of Gastrodia elata15.300
SRR5643664five period of Gastrodia elata17.240
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_171.900
SRR6049655Rhizomagastrodiae_C368-T10_good_178.050
SRR6049656Rhizomagastrodiae_C368-T07_good_186.310
SRR6049657Rhizomagastrodiae_C368-T07_good_146.070
SRR6049658Rhizomagastrodiae_C368-T04_good_170.170
SRR6049659Rhizomagastrodiae_C368-T04_good_180.970
SRR6049660Rhizomagastrodiae_C368-T01_good_174.010
SRR6049661Rhizomagastrodiae_C368-T04_good_171.400
SRR6049662Rhizomagastrodiae_C368-T01_good_1142.370
SRR6049663Rhizomagastrodiae_C368-T01_good_1162.920
SRR6049664Rhizomagastrodiae_C368-T10_good_198.690
SRR6049665Rhizomagastrodiae_C368-T10_good_198.690
SRP279888GastroGastrodia elata tuber 43.61
JuvenJuvenile tuber8.26
Mother_GastroMother tuber of Gastrodia elata 1,204.80
Mother_JuvenMother tuber of Juvenile 609.21