Gene detail

Detail information of GWHGAAEX017926/evm.TU.scaffold_88.128

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|94969268\|ref\|YP_591316.1\|	3.00E-29	ATPase AAA [Candidatus Koribacter versatilis Ellin345]
KOG	KOG0743	0	AAA+-type ATPase
nr	gi\|743767726\|ref\|XP_010914133.1\|	0	PREDICTED: probable mitochondrial chaperone BCS1-B [Elaeis guineensis]
Swissprot	tr\|P46465\|PRS6A_ORYSJ	2.00E-09	26S protease regulatory subunit 6A homolog
trEMBL	tr\|A0A068U5T0\|A0A068U5T0_COFCA	0	Coffea canephora
TAIR	AT5G57480	0	P-loop containing nucleoside triphosphate hydrolases superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000095	3840822	3842539	-

Transcript Sequence
>GWHTAAEX017926 CCGCCCAACACAGCCAATAACCCATCCCTTCAACGCCCTCGCCCCACTAAGAAACGGTTCTGAGAAACAGCGCATTCTCTACAAAGGGATGAAGGAGGTGTGGACCTCAGCGGCGTCTCTCCTGGGCGCCTTGGCCTTCTTCCAGAGCCTCCTCCACAGCTTCTTCCCTGCGGAGCTGCGGCAGTCCATCGCCAGTCTCTCCCGCCGCGTCCTGGACTTCTTCTCCACCTACTGCTTCTTCGACATCACGGAGATGGACGGGGTGAGCACCAACGAGCTCTACGGGGCTGTGCAGCTGTACCTCTCATCATCGGCCTCTGTCTCCGCCTCCCGTCTCTCCCTCTCCCGCCCGGCCAACTCCTCCGCCTTCACCTTCAGTCTCTCCAACAACGACCGCCTGTCGGACTCCTTCGCCGGCGCCACCGCCATCTGGGAGCACATCGTGACGCAGCGGGCGTCGGCTTCCTTCTCGTGGCGGCCTCTCCCGGACGAGAAGCGGGGCTTCACGCTGCGGATTAGCAAGAGGGACAAGCCGGTGATCCTGCCGCGGTACCTGGACCACATCATGAGCACCGCCGCAGACATCCGGCGGCGGAACCAGGAGCGCTTCCTTTACACTAACTCCCGCGGAGCGTCCCTGGACGCGCGCAGCCATCCCTGGGAATCCGTCCCCTTCAAACACCCATCCACCTTCGACACCCTGGCCATGGACCCTGCCCGCAAGCAGGACATCGTGGCAGACCTCCGCAGCTTCTCCGCCGGCCAATCCTTCTACCAGAGGACCGGCCGCGCCTGGAAGCGGGGCTACCTCCTCTACGGCCCTCCCGGCACCGGCAAGTCAAGCATGATCGCCGCCATGGCCAATTTCCTCGCCTACGACATCTACGACCTGGAGCTCACAGAGGTTCACAGCAACTCCGAGCTCAGGAAGCTGCTCATGAAGACCACCTCGAAGTCCATCATCGTCATCGAGGACATCGATTGCTCTGTCTCGCTCTCCAGCCGGGGTGGACCGCCGGTGCGGCCGCTTCAACTGCCCGATGAACCTTCCTGCTCCCCTGATTCGGCCTCGCCCAAGACTGTAACGCTGTCCGGCCTGCTCAACTTCACGGATGGCCTCTGGTCCTGCTGCGGAAGCGAGAGGATCTTCGTCTTCACCACCAATCATATCGACAAGCTCGATCCTGCTTTGCTTAGGTCCGGAAGGATGGATATGCATATACACATGGGGTACTGCTCCTTCCCCGCCCTCAAAATTTTGATGAAAAATTACATAGGGATGAATGAGAACGAATTGGAGGACGTAGGGTTGGTGGGAGAGGTTGAGGCGGCGCTGGAGAAGGCGGAGATAACGCCCGCGGATGTCAGCGAAGTGCTGATAAAGAACAGGAGGTATGAGAAGAGGAGGGTGATGGAGGAGCTGCTGCAGGTTCTCAAGGAAAGAGCGGAGGCGGGGAAGAGAGGCAGAGGATCGAAGGAGGAGGCTAAGCAAGAAGAAGAGGAGGAGCAAGAGAAGCGAGCGCTTGATAGCCCGAAGGAGGACCACGGCGATTCTGAGCAGTTGCTTGAGAACTCCTGCAAACAGAAACAGGGGAAGAAAACAGAGTAGGGAGGCCAGATCGATCCGACGGAATCTTCGATTTATTTCCAGCTCAATTTTTAATTTCGGAAATTAGGGAGCCCTTTTTTATTTCTTTTTTATTTTATTTTATTTTATT

Network for GWHGAAEX017926

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module7

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14363.5	AAA_assoc	26	118	2.90E-21
PF00004.28	AAA	241	381	5.50E-16

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005524	Molecular Function	ATP binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	0.090
SRP064423	SRR2545915	Juvenile tuber	0.410
SRP108465	SRR5643513	five period of Gastrodia elata	1.730
	SRR5643514	five period of Gastrodia elata	3.600
	SRR5643515	five period of Gastrodia elata	1.480
	SRR5643524	five period of Gastrodia elata	1.360
	SRR5643525	five period of Gastrodia elata	2.800
	SRR5643528	five period of Gastrodia elata	1.610
	SRR5643658	five period of Gastrodia elata	1.320
	SRR5643659	five period of Gastrodia elata	3.520
	SRR5643660	five period of Gastrodia elata	2.040
	SRR5643661	five period of Gastrodia elata	1.780
	SRR5643662	five period of Gastrodia elata	1.830
	SRR5643663	five period of Gastrodia elata	7.050
	SRR5643664	five period of Gastrodia elata	3.100
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	3.320
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	6.410
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	5.690
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	1.820
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	4.720
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	3.640
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	4.590
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	3.970
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	12.180
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	16.800
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	8.410
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	8.410
SRP279888	Gastro	Gastrodia elata tuber	2.30
	Juven	Juvenile tuber	9.80
	Mother_Gastro	Mother tuber of Gastrodia elata	2.39
	Mother_Juven	Mother tuber of Juvenile	3.01