Detail information of GWHGAAEX017937/evm.TU.scaffold_88.141


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|474933705|ref|YP_007687287.1|9.00E-24LSU ribosomal protein L7AE [Thermoplasmatales archaeon BRNA1]
KOGKOG33879.00E-7060S ribosomal protein 15.5kD/SNU13, NHP2/L7A family (includes ribonuclease P subunit p38), involved in splicing
nrgi|703087309|ref|XP_010093237.1|1.16E-78NHP2-like protein 1 [Morus notabilis]
Swissprottr|Q9LEY9|NHP2_ARATH2.00E-22H/ACA ribonucleoprotein complex subunit 2-like protein
trEMBLtr|W9QSZ3|W9QSZ3_9ROSA4.00E-79NHP2-like protein 1 {ECO:0000313|EMBL:EXB53739.1}
TAIRAT5G201609.00E-70Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000009541074574118923+
Transcript Sequence

Network for GWHGAAEX017937

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01248.25Ribosomal_L7Ae241122.60E-26
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12845SNU13, NHP2L Spliceosome map03040
Ribosome biogenesis in eukaryotesmap03008

Gene Ontology

GO term OntologyName
GO:0042254Biological Processribosome biogenesis
GO:0003723Molecular FunctionRNA binding
GO:1990904Cellular Componentribonucleoprotein complex
GO:0005730Cellular Componentnucleolus

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms86.220
SRR2545915Juvenile tuber91.840
SRP108465SRR5643513five period of Gastrodia elata65.050
SRR5643514five period of Gastrodia elata76.840
SRR5643515five period of Gastrodia elata62.270
SRR5643524five period of Gastrodia elata68.730
SRR5643525five period of Gastrodia elata43.430
SRR5643528five period of Gastrodia elata50.590
SRR5643658five period of Gastrodia elata38.620
SRR5643659five period of Gastrodia elata103.580
SRR5643660five period of Gastrodia elata99.760
SRR5643661five period of Gastrodia elata114.050
SRR5643662five period of Gastrodia elata86.320
SRR5643663five period of Gastrodia elata85.200
SRR5643664five period of Gastrodia elata92.400
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_171.480
SRR6049655Rhizomagastrodiae_C368-T10_good_1120.910
SRR6049656Rhizomagastrodiae_C368-T07_good_187.570
SRR6049657Rhizomagastrodiae_C368-T07_good_171.630
SRR6049658Rhizomagastrodiae_C368-T04_good_170.820
SRR6049659Rhizomagastrodiae_C368-T04_good_155.840
SRR6049660Rhizomagastrodiae_C368-T01_good_170.250
SRR6049661Rhizomagastrodiae_C368-T04_good_168.550
SRR6049662Rhizomagastrodiae_C368-T01_good_198.320
SRR6049663Rhizomagastrodiae_C368-T01_good_188.550
SRR6049664Rhizomagastrodiae_C368-T10_good_1109.690
SRR6049665Rhizomagastrodiae_C368-T10_good_1109.690
SRP279888GastroGastrodia elata tuber 137.13
JuvenJuvenile tuber113.11
Mother_GastroMother tuber of Gastrodia elata 55.54
Mother_JuvenMother tuber of Juvenile 57.85