Detail information of GWHGAAEX017940/evm.TU.scaffold_88.148


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|384407027|gb|AFH89625.1|2.05E-102allene oxide cyclase [Cymbidium ensifolium]
Swissprottr|Q9LS01|AOC3_ARATH1.00E-80Allene oxide cyclase 3, chloroplastic (Precursor)
trEMBLtr|I0DHH1|I0DHH1_CYMEN8.00E-103Allene oxide cyclase {ECO:0000313|EMBL:AFH89625.1}
TAIRAT3G257804.00E-80allene oxide cyclase 3

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000009542916624293517+
Transcript Sequence

Network for GWHGAAEX017940

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module2

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF06351.10Allene_ox_cyc742475.90E-87
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K10525AOC Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
alpha-Linolenic acid metabolismmap00592

Gene Ontology

GO term OntologyName
GO:0009695Biological Processjasmonic acid biosynthetic process
GO:0016853Molecular Functionisomerase activity
GO:0046423Molecular Functionallene-oxide cyclase activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms6.320
SRR2545915Juvenile tuber12.100
SRP108465SRR5643513five period of Gastrodia elata52.270
SRR5643514five period of Gastrodia elata60.690
SRR5643515five period of Gastrodia elata79.700
SRR5643524five period of Gastrodia elata59.330
SRR5643525five period of Gastrodia elata38.020
SRR5643528five period of Gastrodia elata59.410
SRR5643658five period of Gastrodia elata30.300
SRR5643659five period of Gastrodia elata52.900
SRR5643660five period of Gastrodia elata31.860
SRR5643661five period of Gastrodia elata34.940
SRR5643662five period of Gastrodia elata50.770
SRR5643663five period of Gastrodia elata55.710
SRR5643664five period of Gastrodia elata24.890
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_129.360
SRR6049655Rhizomagastrodiae_C368-T10_good_130.210
SRR6049656Rhizomagastrodiae_C368-T07_good_134.970
SRR6049657Rhizomagastrodiae_C368-T07_good_122.200
SRR6049658Rhizomagastrodiae_C368-T04_good_127.520
SRR6049659Rhizomagastrodiae_C368-T04_good_118.280
SRR6049660Rhizomagastrodiae_C368-T01_good_145.920
SRR6049661Rhizomagastrodiae_C368-T04_good_125.080
SRR6049662Rhizomagastrodiae_C368-T01_good_1142.560
SRR6049663Rhizomagastrodiae_C368-T01_good_1103.710
SRR6049664Rhizomagastrodiae_C368-T10_good_162.040
SRR6049665Rhizomagastrodiae_C368-T10_good_162.040
SRP279888GastroGastrodia elata tuber 27.46
JuvenJuvenile tuber9.83
Mother_GastroMother tuber of Gastrodia elata 11.02
Mother_JuvenMother tuber of Juvenile 4.31