Detail information of GWHGAAEX017943/evm.TU.scaffold_88.152
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|379012570|ref|YP_005270382.1| | 0 | plasma-membrane proton-efflux P-type ATPase [Acetobacterium woodii DSM 1030] |
| KOG | KOG0205 | 0 | Plasma membrane H+-transporting ATPase |
| nr | gi|695018533|ref|XP_009396235.1| | 0 | PREDICTED: plasma membrane ATPase [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q7XPY2|PMA1_ORYSJ | 0 | Plasma membrane ATPase |
| trEMBL | tr|A0A061GPS2|A0A061GPS2_THECC | 0 | Plasma membrane ATPase 4 isoform 1 {ECO:0000313|EMBL:EOY31840.1} |
| TAIR | AT4G30190 | 0 | H(+)-ATPase 2 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000095 | 4344805 | 4384536 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX017943
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module1 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00690.25 | Cation_ATPase_N | 21 | 85 | 6.20E-14 |
| PF00122.19 | E1-E2_ATPase | 130 | 308 | 1.10E-47 |
| PF00702.25 | Hydrolase | 325 | 602 | 2.00E-18 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K01535 | PMA1, PMA2 | Metabolic pathways | map01100 |
| Oxidative phosphorylation | map00190 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0120029 | Biological Process | proton export across plasma membrane |
| GO:0000166 | Molecular Function | nucleotide binding |
| GO:0008553 | Molecular Function | hydrogen-exporting ATPase activity, phosphorylative mechanism |
| GO:0016021 | Cellular Component | integral component of membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 78.680 |
| SRR2545915 | Juvenile tuber | 21.790 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 248.150 |
| SRR5643514 | five period of Gastrodia elata | 209.480 | |
| SRR5643515 | five period of Gastrodia elata | 140.370 | |
| SRR5643524 | five period of Gastrodia elata | 187.840 | |
| SRR5643525 | five period of Gastrodia elata | 897.970 | |
| SRR5643528 | five period of Gastrodia elata | 915.260 | |
| SRR5643658 | five period of Gastrodia elata | 420.100 | |
| SRR5643659 | five period of Gastrodia elata | 45.580 | |
| SRR5643660 | five period of Gastrodia elata | 47.820 | |
| SRR5643661 | five period of Gastrodia elata | 61.130 | |
| SRR5643662 | five period of Gastrodia elata | 98.240 | |
| SRR5643663 | five period of Gastrodia elata | 66.350 | |
| SRR5643664 | five period of Gastrodia elata | 96.100 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 129.050 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 210.940 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 133.700 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 106.930 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 71.810 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 66.490 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 81.850 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 71.480 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 242.430 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 106.060 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 312.080 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 312.080 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 99.89 |
| Juven | Juvenile tuber | 96.24 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 60.02 | |
| Mother_Juven | Mother tuber of Juvenile | 55.33 |