Gene detail

Detail information of GWHGAAEX017946/evm.TU.scaffold_89.3

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|16263937\|ref\|NP_436729.1\|	7.00E-37	CbbX protein [Sinorhizobium meliloti 1021]
KOG	KOG0730	2.00E-154	AAA+-type ATPase
nr	gi\|743800259\|ref\|XP_010925845.1\|	0	PREDICTED: caseinolytic peptidase B protein homolog [Elaeis guineensis]
Swissprot	tr\|O22025\|CFXQ_CYAME	2.00E-36	Protein cfxQ homolog
trEMBL	tr\|A0A068U4A7\|A0A068U4A7_COFCA	0	Coffea canephora
TAIR	AT3G24530	2.00E-154	AAA-type ATPase family protein / ankyrin repeat family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000090	100661	123824	+

Transcript Sequence
>GWHTAAEX017946 CTTGCTCCAAGATAATATGACTAGAGGTAGATTTTTTGTGCATCGAGCGGGCGGCTTGTGAAACTGGTTACGCGATTTGAGGTCCTGACGGAGGATTCAGATTTGCGTTATATCCCCCGTTACAATTTTGGGCTATTTAATAAGGATGGCTGTTGGAGAAAATGGCATGCCTAGGAGGCAGCAGAGATATTCAAAGCCTTCCACAATCCATAGTTGCGCAGAGCTCGGCGATCTCTCCGGCCTTAAGAAATTATTTGAGGAAAATCCTTTACTTCTTAATGCCAAGAACAGCATTATGGCCCAGACACCAATGCATATAGCAGCTGGCTATAATAAAATTGACATTGTCAAATTCTTGCTCGAGTGCACAGGCCCTGAAAAGGTTGATCTGGAGTCCAAGAACATGTACGGTGAGACACCTTTGCACATGGCAGCAAAAAATGGTTGCAGTGAGGCTGCTCGACTGCTTCTCTCCAATGGAGCTTCATTAAAGGCAAAAGCCCATAATGGAATGACGCCTCTGCATTTAGCTGTTTTTCATGTACGAGATGGCCGCGAGTGTGCCACAGTGAATACTTTACTAGAATACAATGCGGACTGTAGTATCAAGGACAATGAGGGGTTGACTCCCTTGAATCATATATCTGAATGGCATGACAATGAGAAGCTGAGGGACCTTCTTAATCGGCACATTAAAGAGCAATTAAAGATCAAAGCCCTCCGAGCTTGTGGTGAGATAAAAGCACATATGGTTGAGTTTGAAGCTGCATTGTCAAACATTGTGGGACTTCATTCACTGAAGTTGCAACTGCATAAATGGGCAAATGGAATGATATTCGATGAGAAAAGAAGGGCCTTGGGCTTGAGCATTGCTCCTAGAAAAGTTCCTCATATGGCTTTTCTTGGTAACCCAGGGACAGGTAAAACCATGGTTGCTCGGGTTCTTGGAAAACTACTGCATATGGTTGGAATCCTTTCTTCAGATAAGGTGATCGAAGTGCAGAGAACTGACCTGGTTGGAGAATTTGTGGGGCACACAGGTCCAAAGACCAGGAAGAAGGTACCATGCATTCCTCTCAAGTCTGGCTCACAAGTTATGTGTTTAGCAGGCAATTATCCCAAAATATATGAATCTTATCCGCAGATACAGGAAGCTGAGGGAGGAGTCCTTTTCGTCGATGAGGCCTACAGACTGATACCCGCACAAAAATCGGACGACAAGGATTACGGCATTGAGGCCTTGGAAGAAATCATGGCCGTTATGGATAGCGGGAACATCGTGGTTATATTCGCGGGATACTGCGAGCCGATGAAGCGCGTGATCGCGTCAAATGAGGGATTCTGCAGAAGGGTTACGAAATTCTTTACTTTCGATGACTTCACTCCAGCCGAGCTCGCCCAAATCCTTCGCTCGAAAATGGATTTCCAGGAAAACAACAATAGCTTGCTTTATGGATTCAAGCTTCACCCCTCGTGCACTGTGCAGGCGCTGGCCGATCTTATCTGCAGAGGAACCACGGAGAAGCAGAGAGAGGAGATGAACGGAGGCCTCATCAATCCTTTGCTTTGTAACGCTCGGGAAAATTTGGATCTCCGGTTGGACTTTGACTGCTGCGACGCGGACAGCCTTGTTACGATCACCATGGATGATTTGGAGGAAGGTCTTGCAGCACTTTCTAGGCCCAGGTGAAAATATTTTCAAGGATTAGAGTCTTTGTATTATTAGTAGCCCAGCGTTATATGTAATATATAGCAGTCGGAGTGTGTGTTCTTAAAAAGTCTTCCTTGATTCAATTATTCATTCTTATGGATGGATACTCGGAATAATATAATCTATTTTTGGCTTAGTTTTGGAAGTGCAATTATATTTAAAAAGAGAGAGAGAGAGAGACAAAATCTCTCTTTTAGTCTATATTTTTGTATAATCTCATTTTAGCTTATATTTATCAAATAAATTTCAAAGTTATCAAAAACTAATCATCTATTGAATAAATAAGAATCACATATTAAACTTAAAT

Network for GWHGAAEX017946

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12796.6	Ank_2	22	118	2.90E-14
PF00023.29	Ank	121	157	0.014
PF00004.28	AAA	250	392	3.50E-10

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding
GO:0005524	Molecular Function	ATP binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	28.690
SRP064423	SRR2545915	Juvenile tuber	28.040
SRP108465	SRR5643513	five period of Gastrodia elata	22.300
	SRR5643514	five period of Gastrodia elata	18.530
	SRR5643515	five period of Gastrodia elata	22.940
	SRR5643524	five period of Gastrodia elata	20.180
	SRR5643525	five period of Gastrodia elata	19.250
	SRR5643528	five period of Gastrodia elata	22.690
	SRR5643658	five period of Gastrodia elata	17.820
	SRR5643659	five period of Gastrodia elata	26.090
	SRR5643660	five period of Gastrodia elata	27.470
	SRR5643661	five period of Gastrodia elata	25.020
	SRR5643662	five period of Gastrodia elata	26.440
	SRR5643663	five period of Gastrodia elata	27.120
	SRR5643664	five period of Gastrodia elata	27.430
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	19.970
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	23.490
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	22.300
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	20.990
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	22.480
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	21.940
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	20.030
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	22.120
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	18.150
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	21.500
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	17.520
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	17.520
SRP279888	Gastro	Gastrodia elata tuber	28.71
	Juven	Juvenile tuber	40.13
	Mother_Gastro	Mother tuber of Gastrodia elata	24.45
	Mother_Juven	Mother tuber of Juvenile	32.10