Detail information of GWHGAAEX017947/evm.TU.scaffold_89.4
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG1061 | 0 | Vesicle coat complex AP-1/AP-2/AP-4, beta subunit |
| nr | gi|672137251|ref|XP_008792344.1| | 0 | PREDICTED: beta-adaptin-like protein A [Phoenix dactylifera] |
| Swissprot | tr|Q9LDK9|APBLA_ARATH | 0 | Beta-adaptin-like protein A |
| trEMBL | tr|B9H9C3|B9H9C3_POPTR | 0 | Uncharacterized protein {ECO:0000313|EMBL:EEE93091.1} |
| TAIR | AT5G11490 | 0 | adaptin family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000090 | 182947 | 229393 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX017947
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01602.19 | Adaptin_N | 58 | 576 | 3.70E-94 |
| PF09066.9 | B2-adapt-app_C | 743 | 857 | 1.30E-24 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0015031 | Biological Process | protein transport |
| GO:0006886 | Biological Process | intracellular protein transport |
| GO:0016192 | Biological Process | vesicle-mediated transport |
| GO:0030276 | Molecular Function | clathrin binding |
| GO:0030131 | Cellular Component | clathrin adaptor complex |
| GO:0030117 | Cellular Component | membrane coat |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 48.270 |
| SRR2545915 | Juvenile tuber | 66.340 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 50.890 |
| SRR5643514 | five period of Gastrodia elata | 52.660 | |
| SRR5643515 | five period of Gastrodia elata | 49.600 | |
| SRR5643524 | five period of Gastrodia elata | 51.900 | |
| SRR5643525 | five period of Gastrodia elata | 35.140 | |
| SRR5643528 | five period of Gastrodia elata | 31.700 | |
| SRR5643658 | five period of Gastrodia elata | 40.370 | |
| SRR5643659 | five period of Gastrodia elata | 63.290 | |
| SRR5643660 | five period of Gastrodia elata | 70.910 | |
| SRR5643661 | five period of Gastrodia elata | 61.430 | |
| SRR5643662 | five period of Gastrodia elata | 64.890 | |
| SRR5643663 | five period of Gastrodia elata | 71.140 | |
| SRR5643664 | five period of Gastrodia elata | 78.630 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 62.970 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 67.710 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 57.100 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 66.220 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 59.810 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 59.130 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 58.750 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 55.980 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 43.150 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 42.420 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 46.670 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 46.670 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 80.90 |
| Juven | Juvenile tuber | 104.47 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 50.17 | |
| Mother_Juven | Mother tuber of Juvenile | 68.75 |