Gene detail

Detail information of GWHGAAEX017956/evm.TU.scaffold_89.22

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|187251744\|ref\|YP_001876226.1\|	3.00E-13	DNA polymerase III subunit epsilon [Elusimicrobium minutum Pei191]
KOG	KOG4793	4.00E-54	Three prime repair exonuclease
nr	gi\|743868829\|ref\|XP_010905672.1\|	4.10E-95	PREDICTED: exonuclease DPD1, chloroplastic/mitochondrial isoform X1 [Elaeis guineensis]
Swissprot	tr\|Q682U6\|DPD1_ARATH	1.00E-54	Exonuclease DPD1, chloroplastic/mitochondrial {ECO:0000303\|PubMed:21521697} (Precursor)
trEMBL	tr\|M0TSP3\|M0TSP3_MUSAM	5.00E-90	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr8P22400_001}
TAIR	AT5G26940	4.00E-54	Polynucleotidyl transferase, ribonuclease H-like superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000090	1774659	1779574	+

Transcript Sequence
>GWHTAAEX017956 CGACGAGATCAAGTCTGTAAATTGGGAGTAGAAGCTGTTTCCAACATCAGGAAATAACATACAGTTAGTTCCTCAGTTGCTCAGTTTGGGAGTTTCTTAACACCTCTTGCGTCCTTTTTTATTGCCAGCCACCCTGTTCCACTCTCCTTCGGCTTAGGGTTTGGATTTAAGGTTTTGCGCGATTTGGCCATTTTCGGAATTGTTTGCTTTGCGTGGAGCCGTAATTGGAATAGCGGTTTAAGCATCTTGCGATTTTTTTTCTGCGACACCTCTTCCTCTTCACTTCGGCTTAGGTTTTCTATTTTATTATTCATCAAATCATTCAAAACCGGGGATTATATCATTTGGCTGTCCTTCCTAACTGGGCCATTTCAGCCGAATCAATGTAGAAATCTATGCCTCTAGAAATTTTTTATCATTTTGATATCAGCTCTTTAGAACAATTACAGCATTGAGTGGTCTTCTCATCACAATGCCTATTACTTCCATTTGGTTTAGAAACTATCATCAGATAAGGAGCTACGTTGGGAGAAATTTTTGTTTCAGAATTCTTAAATCTCATGCTACATTCTTTTCTGAAAAACAGCTGCATTATAGGATGTGTAGTTTGCAGTCGTTAGCAGCAAAAATTCAACAATGCAGTCAGAGCTCAGGCAGCATTAATTCTTGTGATATTAAGAATGATAAAAAAAGGTGGTCAAATTTTCCCGACTGCAAGACTTCTCAGCTTTTCAGTAACCAGAAAATTTCAGGGGAAATGGTATCTAATAGACCTGCTACTCTTTTAGTATTAGATATAGAAACCACTCGTTTAAGTAGGAAAAAGGGGAGAATTATTGAAATTGCAATTCGAGACCTCAATGGGGGTAAGAACAGCACGTTTCAAACTCTTATCAATCCTAGATGTGCTATACTCAATACACGCATTCATGGCATTAGCTATTATATGGTTAACAAACCCGAAATCCCAAGTTTTGATGAACTTGTTCCTATGCTAATGCACTATATAAATAGCCGTCGGAGGAATGGCAGACCTGTCCTGTGGGTCGCTCATTTTGGACGGACATTTGACTTTCCTTTTCTCATTTCGGAGTTTAAACGTTGCTCTGTGGAAATTCCTGATGATTGGCTCTTTCTGGATACTCGAAATCTTGCTAGCCAGCTGAGAAATCCAGACGGTTCAAATCTTAAATCCATCTCACTTGAGGCGCTCTGCAAACATTTCGGGATTTCTTTGGAGGGACCTGCGCATAGAGCAATGACTGATGTCAATGCGTTGGCGTCTGTTGTCCAGCGTATTACTTGCGAACTTAAAATAACAGTTCCCGAGCTCTTGCAAATAGCTTTACAGCCCTCCGACATTTCAAAATGATGTTGATCTTAAAACCTGCAGAATCTGCTATCATCTAACTTCTAGCTTTACTCCATTTTTTGCAAAGTTCCATGCTCAGAATTTCTGAACACAAATTATCTGTTGTGCCACTTCATTGTTTGGTCTCATAGAAAGGGATCATATACCAACCATATATGTAATTTAAAGATGTGCAGAAACTTACAGTTGGGCTATAGTTTTGTTTCATAATAAATATTATGCACAGCTGTCTTCTGCTACTAGTGTATGCCTTGTGCTTTGATGTCTTTTTTAGTTTTACGACATTCCTATCTTGTAAATACTCTCCCTTTGAAATGTAATTGGGC

Network for GWHGAAEX017956

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00929.23	RNase_T	105	272	2.80E-17

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003676	Molecular Function	nucleic acid binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	5.150
SRP064423	SRR2545915	Juvenile tuber	3.670
SRP108465	SRR5643513	five period of Gastrodia elata	4.700
	SRR5643514	five period of Gastrodia elata	5.280
	SRR5643515	five period of Gastrodia elata	4.030
	SRR5643524	five period of Gastrodia elata	4.370
	SRR5643525	five period of Gastrodia elata	8.000
	SRR5643528	five period of Gastrodia elata	6.460
	SRR5643658	five period of Gastrodia elata	6.920
	SRR5643659	five period of Gastrodia elata	3.420
	SRR5643660	five period of Gastrodia elata	3.000
	SRR5643661	five period of Gastrodia elata	2.800
	SRR5643662	five period of Gastrodia elata	3.420
	SRR5643663	five period of Gastrodia elata	3.400
	SRR5643664	five period of Gastrodia elata	2.940
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	5.850
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	4.720
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	6.450
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	5.440
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	4.400
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	3.690
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	7.890
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	5.770
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	5.080
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	8.640
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	5.650
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	5.650
SRP279888	Gastro	Gastrodia elata tuber	2.27
	Juven	Juvenile tuber	3.25
	Mother_Gastro	Mother tuber of Gastrodia elata	5.03
	Mother_Juven	Mother tuber of Juvenile	3.54