Detail information of GWHGAAEX017962/evm.TU.scaffold_89.31
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG0160 | 0 | Myosin class V heavy chain |
| nr | gi|743755174|ref|XP_010937148.1| | 0 | PREDICTED: myosin-17-like [Elaeis guineensis] |
| Swissprot | tr|F4K5J1|MYO17_ARATH | 0 | Myosin-17 |
| trEMBL | tr|M0TTS8|M0TTS8_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr8P26250_001} |
| TAIR | AT1G54560 | 0 | Myosin family protein with Dil domain |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000090 | 2019468 | 2065515 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX017962
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF02736.18 | Myosin_N | 10 | 48 | 3.60E-11 |
| PF00063.20 | Myosin_head | 64 | 720 | 1.40E-252 |
| PF00612.26 | IQ | 785 | 804 | 0.0014 |
| PF01843.18 | DIL | 1350 | 1453 | 2.00E-24 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0007015 | Biological Process | actin filament organization |
| GO:0005515 | Molecular Function | protein binding |
| GO:0003774 | Molecular Function | motor activity |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0016459 | Cellular Component | myosin complex |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 57.360 |
| SRR2545915 | Juvenile tuber | 42.550 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 24.160 |
| SRR5643514 | five period of Gastrodia elata | 26.090 | |
| SRR5643515 | five period of Gastrodia elata | 27.080 | |
| SRR5643524 | five period of Gastrodia elata | 23.190 | |
| SRR5643525 | five period of Gastrodia elata | 37.770 | |
| SRR5643528 | five period of Gastrodia elata | 27.370 | |
| SRR5643658 | five period of Gastrodia elata | 43.940 | |
| SRR5643659 | five period of Gastrodia elata | 33.740 | |
| SRR5643660 | five period of Gastrodia elata | 34.150 | |
| SRR5643661 | five period of Gastrodia elata | 32.610 | |
| SRR5643662 | five period of Gastrodia elata | 35.020 | |
| SRR5643663 | five period of Gastrodia elata | 36.840 | |
| SRR5643664 | five period of Gastrodia elata | 42.600 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 32.780 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 31.440 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 33.980 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 36.540 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 40.060 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 41.480 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 34.120 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 36.840 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 25.420 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 28.520 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 27.010 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 27.010 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 52.21 |
| Juven | Juvenile tuber | 48.72 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 55.96 | |
| Mother_Juven | Mother tuber of Juvenile | 45.67 |