Gene detail

Detail information of GWHGAAEX017965/evm.TU.scaffold_89.35

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|162567476\|ref\|NP_419104.2\|	7.00E-30	sensory box histidine kinase [Caulobacter crescentus CB15]
nr	gi\|672139008\|ref\|XP_008793276.1\|	1.19E-177	PREDICTED: protein TWIN LOV 1-like isoform X1 [Phoenix dactylifera]
Swissprot	tr\|O64511\|TLOV1_ARATH	2.00E-130	Protein TWIN LOV 1
trEMBL	tr\|W1P9V3\|W1P9V3_AMBTC	1.00E-149	Uncharacterized protein {ECO:0000313\|EMBL:ERN03770.1}
TAIR	AT2G02710	7.00E-105	PAS/LOV protein B

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000090	2190898	2195944	+

Transcript Sequence
>GWHTAAEX017965 AAACATGTGCTTATCTTTGTAATCTCTGTCCCAGATAGAGCCTTCAATCTCAGAAGCTCTTCTGAAGTGCAAAGCCCTAGCGCTCGTTCTCGCCTTCTTTCTTCCGACTCTTCAGTGATCGCACATGGTGGCATTTCCTCTGCTTCCGATCACACCTGCTGTTGATCGTTGCGGAGATGGGAAGCAACGAGGCGGGCCTTGTCGAATCCCTAACCTCCCGCTACTCAGAATGGGTGATTGAATCCCTCGAAGATCTGCCGCACGATCTCAGCTTTCTCATCACTGATCCTTACATGGCAGGCCACCCAATCGTCTTCGCAAGCCGAGGGTTTCTTTCGATGTCTGGGTTTTCGCGGGAAGAGGTCGTCGGTCGGAATGGGAGGATGTTTCAGGGGCGTGATACGGATCGGAGCTCGGTGATGGAGATCAGGGAGGCCATTCGGGAGGAAAGGCCGGTGCAGATTTGTTTATTGAACTATAGGAAGGATGGTACGTCGCACTGGATTTTATTCCATCTTTGTCCTGTTTTTGGGATGGATGATGGAAGGCTAGTTCACTTCTTTGCCGTGCTTGTGCCAATTTCTCGGAAGCGTTCCAGCTGCCGGCGTGAGGTGGTACGGGGAGGACTATTACTTAGGGCTTGTAGGAATGAAGTTCATTCTGATCTAGACTTCAGATGTGGTTATCCCTTCGATTCCTATGAAGATTCAGATAATCGAGGGTTGGAGGACGAAGAGCGGAGGGATGCAGGTGATCGTGAGAAGCAGAAAGCATTTGATGGTGCTACAGAGATTCTTTTGAAACTGGCGCATTATAGTAAGGTTACGGGAAGAGTTGTGTGTGGGAAGAGAAGCAGTTCCCGGTCTGGCATTGCTCCCCTGTGTTCATCCTTGTACACTTCTCTCGGTAGAATCAAACAAAGCTTTGTGTTTTTGCCTTGCAGGACTGATCCTCATTTACCTGATATGCCAATCGTCTATGCTAGTGACGCCTTCTTGACTTTGACAGGCTACACAAAAGATGAAGTTTTGGGACGTAATTGCAGGTTCTTAGGCGGGCCCAACACCAATGCCGAGGCCTCTGGGCAGATTAAAGAAAGCATACTGGCAGAAAAAGCTTGCACTGTGCGTATTCTGAATTACAGAAAAGATGGAACTTCATTTTGGAACATTCTGCACGTTTCACCTATCCGAAATTCATCTGGCAAGATTGCATTTTATGTCGGAGTACAAATTGATGAGGGATCGAAGGTTGACGAACGGGAGTTGAGCCTGAAAATCAGACAGTTGGGTGCCGTGGGCGCTGTCAAGGTGGCCGTGAGGAGCCTGTCTTAGAGTGCGAGAGGGACGGGTTGTCTTTGAGGTCTATTTAATATCATACATACGAGAGAGGAGCACTTTCTTTCATCCTTCCGGCCTGCAGCCTGCCCTTGAACCGCCCTGCCGGCCATTTACTCCTGCCAATGTATGCCTCGCTCAATGTCGGGCGTCACCGCGCCGGGAGCCAATGGAAGCCTCTCCTCTCTCCCACACAACGTAAATATCAGGATCAAAGGTACACATGGCATTGGTTTTTTGCAATTTGGGGTATATTTGAGCTGTAAAATAATAGATGATTTCTGATGATATGTAGCATGGTATACATTATGAGGTCGTCATAATTTCAATTAAGGTTGAAAGCAAGTTGTCTCTGAATAAGCTCTTTAGCTGCAGAAATTCACTGATGGGTTGGTTTTATGCGTTACTGAATCCGTCAATGATGAAATTTATTTTAATGTTTATTTCAATAATGTGATTGGGTTTGATATGCTACTCTCAATCTTAAAAACGAGAAGGCAGAGCAATAATCAAAGCTCCCTTCATGAGCTTCTATCTACTATATTCTTAAAGGTGTTGCAAAAGCCTTCATCATCCAGATATCTGATACGTGCTTCAAACTCTGGAAGATCAATTTGTTGCTGATGCCTGTCTCGAGATGAAGATCACCCATGTCGATCACTTTTGCAATGCCATCATTGCACTTCTTCACGCAGTCAAAGTCTTTTGGCGTATAGGTGGAGAAGAACTGTCTCCCAGTCGTGGCATGAATTGATACACCAATGTTGATAGAGTTTCCTTTGTATAGGAGAGAGACTTTGTTTCTGCTGTGAACCGTAGAAGAATTGTCTTTAATATCGAACTTCTAATCTTTTCTTTTCGGTTGCTCTCTGTACCAAGCTTGCTCTTGCTTCACAATTGGAGGAGTTTGGTCTGAGGCTCTTGCTGCAACCTGACCTGTTCACCACAAGCATATTTTATGCGACTGTAAGTGCCACATGTCTTCTCCGCATCTCATTTAGAACAGTTCCTCTCATCGCATCCTTGGTCAGAACATCTGAAGCTAAGTTCATCGAAATGCCTCCCAAGTATCCGGTAGATATTCAATTAACAGCAGTCTCAGCAGTTAGTTCTTCATCAAATCGAATATTTCATATCTGAGAGTTGATCTTAATTAGCGTTCAGATGATTCGTCATCAGCGTCCAGCTTCTCCTAGACTTCCTTAGCATCATTCTCATCGCTAATGTGATTTAGCAAATCGCCGTCCACCCGTCGAAGGAGGATAAAGCCGCGCATTTCCAAAAGAAAAAAACCTACCTTAAAAATACTTGGACGTTTGGGGCAATGCATGAGCAATGGGCGCGACTTGGTGCACAAACAACAGTAAAAGGGGGGCTATGAGGTGGCTTGCTCACAATTAAATAGAAGACCCTCCCTTTGAAGCACATGTTTGTCAAATTGAAGGCCTTACCAAGAATTTAGAAGACAAATCAATGGGATTGCTAAAGAACAATTAATTGAAGAAATATATGTGCTTGTTGATGACATTTAAAATTTGTTGCATAATTTGCTTGGGCACATCATTTTTTTTGCATCTAAAAGTGGTTTCTTTTTAATTAAACATTAATTTGAGATTAGT

Network for GWHGAAEX017965

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13426.6	PAS_9	42	136	1.20E-14
PF13426.6	PAS_9	262	354	3.40E-18

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	11.860
SRP064423	SRR2545915	Juvenile tuber	9.860
SRP108465	SRR5643513	five period of Gastrodia elata	19.230
	SRR5643514	five period of Gastrodia elata	21.320
	SRR5643515	five period of Gastrodia elata	18.490
	SRR5643524	five period of Gastrodia elata	21.910
	SRR5643525	five period of Gastrodia elata	25.620
	SRR5643528	five period of Gastrodia elata	18.270
	SRR5643658	five period of Gastrodia elata	22.820
	SRR5643659	five period of Gastrodia elata	18.790
	SRR5643660	five period of Gastrodia elata	19.980
	SRR5643661	five period of Gastrodia elata	17.470
	SRR5643662	five period of Gastrodia elata	21.410
	SRR5643663	five period of Gastrodia elata	21.520
	SRR5643664	five period of Gastrodia elata	22.850
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	18.670
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	12.870
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	17.210
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	22.360
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	19.670
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	24.840
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	17.210
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	20.100
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	15.930
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	16.900
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	15.650
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	15.650
SRP279888	Gastro	Gastrodia elata tuber	29.29
	Juven	Juvenile tuber	36.25
	Mother_Gastro	Mother tuber of Gastrodia elata	29.05
	Mother_Juven	Mother tuber of Juvenile	32.18