Detail information of GWHGAAEX017966/evm.TU.scaffold_89.36


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|743774594|ref|XP_010917655.1|2.23E-32PREDICTED: DNA-directed RNA polymerase III subunit RPC7-like [Elaeis guineensis]
trEMBLtr|M0SML0|M0SML0_MUSAM6.00E-30Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr4P09930_001}

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000009021944642228256-
Transcript Sequence

Network for GWHGAAEX017966

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module8

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF11705.7RNA_pol_3_Rpc31832724.60E-16
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K03024RPC7, POLR3G RNA polymerase map03020
Cytosolic DNA-sensing pathwaymap04623

Gene Ontology

GO term OntologyName
GO:0006383Biological Processtranscription from RNA polymerase III promoter
GO:0003899Molecular FunctionDNA-directed RNA polymerase activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms103.870
SRR2545915Juvenile tuber100.880
SRP108465SRR5643513five period of Gastrodia elata13.710
SRR5643514five period of Gastrodia elata11.270
SRR5643515five period of Gastrodia elata11.980
SRR5643524five period of Gastrodia elata11.390
SRR5643525five period of Gastrodia elata7.130
SRR5643528five period of Gastrodia elata6.890
SRR5643658five period of Gastrodia elata8.290
SRR5643659five period of Gastrodia elata7.710
SRR5643660five period of Gastrodia elata7.910
SRR5643661five period of Gastrodia elata8.640
SRR5643662five period of Gastrodia elata5.910
SRR5643663five period of Gastrodia elata7.860
SRR5643664five period of Gastrodia elata4.690
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_114.890
SRR6049655Rhizomagastrodiae_C368-T10_good_19.820
SRR6049656Rhizomagastrodiae_C368-T07_good_110.100
SRR6049657Rhizomagastrodiae_C368-T07_good_116.010
SRR6049658Rhizomagastrodiae_C368-T04_good_122.050
SRR6049659Rhizomagastrodiae_C368-T04_good_125.410
SRR6049660Rhizomagastrodiae_C368-T01_good_112.840
SRR6049661Rhizomagastrodiae_C368-T04_good_120.160
SRR6049662Rhizomagastrodiae_C368-T01_good_18.350
SRR6049663Rhizomagastrodiae_C368-T01_good_111.340
SRR6049664Rhizomagastrodiae_C368-T10_good_113.810
SRR6049665Rhizomagastrodiae_C368-T10_good_113.810
SRP279888GastroGastrodia elata tuber 15.27
JuvenJuvenile tuber8.70
Mother_GastroMother tuber of Gastrodia elata 12.99
Mother_JuvenMother tuber of Juvenile 10.14