Gene detail

Detail information of GWHGAAEX017972/evm.TU.scaffold_89.43

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|46446831\|ref\|YP_008196.1\|	2.00E-18	hypothetical protein pc1197 [Candidatus Protochlamydia amoebophila UWE25]
nr	gi\|672121108\|ref\|XP_008783847.1\|	0	PREDICTED: putative adenylate cyclase regulatory protein isoform X1 [Phoenix dactylifera]
trEMBL	tr\|M0T6Y2\|M0T6Y2_MUSAM	7.00E-177	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr6P14340_001}
TAIR	AT4G23840	5.00E-51	Leucine-rich repeat (LRR) family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000090	2345080	2364327	+

Transcript Sequence
>GWHTAAEX017972 GAAGGGCTGAGGAAGTCATCGCTCGACTAGCCATATCTCTCCCTGCTAATCAAAGGGCAAAAAATGGAGAAATGCACAACGCTCCTGGATTTCTGCATGGAAGCCGCGACTGCAAGCAGTGAGAGCGTTGAGAAATGGCGGAGGCAGCGGAGGACCGTCGAGCGCCTTCCCTCTCATCTTGCCGACACTCTCTTCCGCTGTCTTTACCGCCGCCGGCTCCTCTTCCCTTCCATCCTTGAAGTTTTCCAGCTTTCAGTGGAAGTCGTTGACTTGAAAAATGAGAGGACTGTGGATGCTGAGTGGATGGCTTACCTTGGTCAATTTTGTTACATGCGCAGTTTGAATATTGCAGATTGCAAGAACATCAATAATTCTGCTCTTTGGTTTTTATCAGGGCACAGTAGACTTAAAGAGTTGGATCTGTCAAGATGCTCAAAAATCACCGATGCTTGCATACAGCATTTAGTGTCCATTACAACTTTGGAAAAGTTATGCGTGCCAGAAACAGGATTAACATCTGATGCGGTCGCCCATCTCTCTTCTCTTGTAAATCTCCGTGTGTTGGATCTGGGAGGGATTCCTGTAACCGATATGGCTCTTTCATCCTTGCAGGTGCTGAAACAGCTAGAGCACTTAGATTTATGGGGCAGTGAAATTTCTAATGCTGGCGCTGTTATTTTTGAAACATTCCCTGTGTTGTGCGGTTTGAATATAGCTTGGACCAAAGTTAGCAGATTACCCTGTCTTTCTATTACCAGCTTAAACATGAGTAACTGCACCGTCCATTCTTTAGTTGAGGGAGATCGCAGAGCTACTGTTCTTTTGTCGAAGTTAATTGTTTCTGGAGCTACCTTTGTTGACATGCATCAAGTGTTTTCCAGCATCCAGACAGGCTGTTTGAAATATTTGGATATATCTTACTCAAACATTGGGAACTTCAATTTTTTGGCTAACTTGCAAAACCTAGAAAATTTAGATCTTAAATTTTGCCAGATAACAGACAGCTTAATGGAGCAAGTAGCATCTTCAGCCGGAGAGAAATTGAGATATTTAAATATTAGTAATACAAAAATAACATCCCATGCATTAACTATATTATCTGGATGCATCCCAAACCTTGAAGATCTATCTTTATCCCATACTTTCATTGACGATTCATCTCTTTTATATATTGGCATGATGCGTTCTTTGCGCATAATTGATCTTAGTCATACGAGAATTAGAGGAGTTGTTGATTCTGGCAGAGAGAATTTGATAAAACCGCTCTCTTTGGTCGCGCTTCAGAATCTCTCCCACTTGAGAAGTTTGAATTTGGAGGACACAAGAGTGATTTATGAGGGTTTCCAACCTTTGTCCCTTCTGACTGAACTGGAGTCATTGTATCTGAAGAGTGATTTTTTAATCGATGGTTTGTTCGAAGCATTAGAACCCCTTCAAAAACTAAGATCTCTTGGGCTTCAAGGCGGCGCGCTCACAGACCACGGGCTTCTTTCTTACAAGCTTCCTCCTTCACTTCGCGTGTTTGATCTCAGAGGCTGTTGTCTTTTGTCAGCCAATGCCATCTCTTCATTCTGCAAGAAACATCGCCAAGTTGAGGTCAGGCATAAACATGCTAATACCAGCTCACTTGGTTATGATTCGGCTTCATCACTCACAATTAATAAATTGCCGTTGTCAAGGCCAAGAACAGTGAAATCATCCGTGTTTCCCCTTTCAAAGCCTTCGTTTGTAGATGAGAGAATAAAATATAGCATAGACGAATTAACACAGTTGGAGAGCTCACCTGGATCGAGCCGCAGGCCGAAAAACTTCGATCTGCAGTCGAATATTTTCGCAAAAAGGTAACTCTAGCAATTTTGATAAACACATTTCTCTTCTTTGTTTGTAGCAACTCTTTAGTTTGTGTCAATTTTTTTATTCTTGTAATATAATCCATAAGATTTGATGCAAAATGAGAATTTTGCCCTGTATTGTATTCATTATTCTTTTTAAAACTAGTTTAATTGCAAATAGTGTTGTAGTCTAATTTCTATGATTCTTGGATTTGTTTTTCAGACTAAGAAAATTCAAATCTCTTCAACCGCATGTCTATTGAGATTATGATAGAATTTATGATAAAATTTTAAATTTAAGCAATCTCATAGTGGAGTACTTATAGGATGATGATCATGTGTGAAATTACATAAGAATGAAATCATATTATAATTAGATTAAAATATATAACACCTTGATAGTTAAAAGTTTGAGTTGTTGTGTATTATTTAAAATGTTTGGTTTGTTGGATAGTGGTATCCACAATTAAGAACTTGCTATCTCGACCAAGCTTGGGTAGCCCTGGTTGCTCATCTTTGATGCCTTCTAAGATTTTAAAAAAATTTTTTTAGGGAGTTATCTTACTTTCTTTCACATATAACGCTAGGCATCATATTCTGCAAATTACTTCATTTCTACATCCCAAATAGTTCTTTAATGTTTTTGAGTTAAGCCATTTGGATTAGCTTCTTAGTTATACTGATTCTTACTTATCACAATAAGC

Network for GWHGAAEX017972

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00560.32	LRR_1	114	134	1.1
PF13516.5	LRR_6	298	313	0.32

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	6.270
SRP064423	SRR2545915	Juvenile tuber	4.530
SRP108465	SRR5643513	five period of Gastrodia elata	5.720
	SRR5643514	five period of Gastrodia elata	5.210
	SRR5643515	five period of Gastrodia elata	6.750
	SRR5643524	five period of Gastrodia elata	4.930
	SRR5643525	five period of Gastrodia elata	5.890
	SRR5643528	five period of Gastrodia elata	13.940
	SRR5643658	five period of Gastrodia elata	6.750
	SRR5643659	five period of Gastrodia elata	4.860
	SRR5643660	five period of Gastrodia elata	5.230
	SRR5643661	five period of Gastrodia elata	4.560
	SRR5643662	five period of Gastrodia elata	5.540
	SRR5643663	five period of Gastrodia elata	5.080
	SRR5643664	five period of Gastrodia elata	5.100
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	5.790
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	5.580
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	6.300
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	7.690
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	8.950
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	8.010
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	6.590
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	8.140
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	5.060
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	5.890
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	4.840
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	4.840
SRP279888	Gastro	Gastrodia elata tuber	6.81
	Juven	Juvenile tuber	5.83
	Mother_Gastro	Mother tuber of Gastrodia elata	18.89
	Mother_Juven	Mother tuber of Juvenile	21.19