Detail information of GWHGAAEX017976/evm.TU.scaffold_89.47
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|189502744|ref|YP_001958461.1| | 3.00E-16 | hypothetical protein Aasi_1443 [Candidatus Amoebophilus asiaticus 5a2] |
| KOG | KOG1187 | 0 | Serine/threonine protein kinase |
| nr | gi|695056100|ref|XP_009416258.1| | 0 | PREDICTED: receptor-like protein kinase HERK 1 [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q9LX66|HERK_ARATH | 0 | Receptor-like protein kinase HERK 1 (Precursor) |
| trEMBL | tr|C5Z751|C5Z751_SORBI | 0 | Putative uncharacterized protein Sb10g025840 {ECO:0000313|EMBL:EER88743.1} |
| TAIR | AT3G46290 | 0 | hercules receptor kinase 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000090 | 2458352 | 2460619 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX017976
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF12819.6 | Malectin_like | 38 | 390 | 2.90E-37 |
| PF07714.16 | Pkinase_Tyr | 492 | 648 | 1.20E-32 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | RLK-Pelle_CrRLK1L-1 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006468 | Biological Process | protein phosphorylation |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0004672 | Molecular Function | protein kinase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.700 |
| SRR2545915 | Juvenile tuber | 0.340 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 1.270 |
| SRR5643514 | five period of Gastrodia elata | 0.540 | |
| SRR5643515 | five period of Gastrodia elata | 0.220 | |
| SRR5643524 | five period of Gastrodia elata | 0.600 | |
| SRR5643525 | five period of Gastrodia elata | 1.240 | |
| SRR5643528 | five period of Gastrodia elata | 0.520 | |
| SRR5643658 | five period of Gastrodia elata | 0.550 | |
| SRR5643659 | five period of Gastrodia elata | 0.280 | |
| SRR5643660 | five period of Gastrodia elata | 0.150 | |
| SRR5643661 | five period of Gastrodia elata | 0.160 | |
| SRR5643662 | five period of Gastrodia elata | 0.120 | |
| SRR5643663 | five period of Gastrodia elata | 0.230 | |
| SRR5643664 | five period of Gastrodia elata | 0.310 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 0.520 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 1.000 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 0.690 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 0.390 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 0.570 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.470 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 0.320 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 0.640 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 0.950 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 0.720 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 1.080 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 1.080 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.25 |
| Juven | Juvenile tuber | 0.20 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.59 | |
| Mother_Juven | Mother tuber of Juvenile | 0.34 |