Detail information of GWHGAAEX017980/evm.TU.scaffold_89.52
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| nr | gi|695043476|ref|XP_009409432.1| | 6.44E-64 | PREDICTED: ethylene-responsive transcription factor CRF2-like [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q9SUE3|CRF4_ARATH | 2.00E-37 | Ethylene-responsive transcription factor CRF4 |
| trEMBL | tr|M0THF7|M0THF7_MUSAM | 2.00E-56 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr7P14200_001} |
| TAIR | AT4G27950 | 9.00E-37 | cytokinin response factor 4 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000090 | 2650490 | 2652169 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX017980
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module3 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00847.19 | AP2 | 94 | 144 | 3.10E-11 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | AP2/ERF-ERF |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 15.210 |
| SRR2545915 | Juvenile tuber | 15.210 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 11.990 |
| SRR5643514 | five period of Gastrodia elata | 8.070 | |
| SRR5643515 | five period of Gastrodia elata | 9.740 | |
| SRR5643524 | five period of Gastrodia elata | 7.300 | |
| SRR5643525 | five period of Gastrodia elata | 6.390 | |
| SRR5643528 | five period of Gastrodia elata | 4.070 | |
| SRR5643658 | five period of Gastrodia elata | 2.760 | |
| SRR5643659 | five period of Gastrodia elata | 33.770 | |
| SRR5643660 | five period of Gastrodia elata | 35.110 | |
| SRR5643661 | five period of Gastrodia elata | 38.060 | |
| SRR5643662 | five period of Gastrodia elata | 48.540 | |
| SRR5643663 | five period of Gastrodia elata | 39.070 | |
| SRR5643664 | five period of Gastrodia elata | 63.450 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 28.490 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 12.810 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 27.590 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 25.250 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 27.490 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 23.140 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 20.830 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 24.180 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 18.240 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 17.140 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 22.020 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 22.020 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 54.56 |
| Juven | Juvenile tuber | 9.49 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 7.46 | |
| Mother_Juven | Mother tuber of Juvenile | 5.79 |