Gene detail

Detail information of GWHGAAEX017985/evm.TU.scaffold_89.57

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|325279899\|ref\|YP_004252441.1\|	1.00E-24	RNA-directed DNA polymerase (Reverse transcriptase) [Odoribacter splanchnicus DSM 220712]
KOG	KOG1075	0	FOG: Reverse transcriptase
nr	gi\|672153892\|ref\|XP_008797617.1\|	0	PREDICTED: uncharacterized protein LOC103712774 [Phoenix dactylifera]
Swissprot	tr\|P38478\|YMF40_MARPO	2.00E-21	Uncharacterized mitochondrial protein ymf40
trEMBL	tr\|M0YR38\|M0YR38_HORVD	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:MLOC_71959.10, ECO:0000313\|EnsemblPlants:MLOC_71959.11}
TAIR	AT1G74350	0	Intron maturase, type II family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000090	2783102	2785447	-

Transcript Sequence
>GWHTAAEX017985 ATGGGTGAATGCTTCCGTTTTTACGGATTGAAACTCTTGCTTGAAGATGTGGAGAATGCTTCTAGAAAAGCTGATCCTCCGGTGTCGCTGGCGAAAAGCTTAGCATGCCTTACAGATGAAACTGTCTCAGCAGATAATCAGAAGAATGTCAAGAACTCGATGGAGCTGAAGAGATTGATTGAGGTTCGCATAAAGAAGAAAGTGAAGGCGCGTTATCTTAGTGAGAAGTTTTATGATCTTATGGATGTGGTCGTTTCCAATGCAGACACTCTTAGGGATTGCTATGATCTTGTGCGGCTGAGCTCTCATGTTGAACTGGCATCACCAAAGGATGACCTTTCCTTTTCTACCATGGCCGAACAGCTTGCAAATGGTGATTTTGATGTCAAGGAAAATGTTGTGACAATGTATGGAAAGGACGATTGGAGATATTGCTTGGTTCTCCCCAATCTTAAGCTGAGAGTCATACAAGAGGCAGTCAGAGTTGTTCTTGAGGTTGTTTACAGGCCTCATTTTTCGAGAATATCCCATGGCTGTAGAAGTGGAAGAGGGCACCGTTCAGCTCTGAGATTTGTTCAGAAGGAGGCTTATAATTCGGATTGGTGGTTCACAGTATCTATGAAAAAAGTTGCGGACATCAATATCCTTTCAAAATTGATATCCGTGATGGAAGAAAATATCCAGGATATTAAGTTATTTCAATTCATATATAAATTATTTGATGCCCAAGTTCTTAACTTGGTGTTTGGTGTATTCCCAAAGGGCCATGGACTGCCGCAGGAAGGAGTTCTCTCTCCTATTCTAATGAATATCTATCTTGACATGTTTGACAGTGAAGTGGTTAGAATGTCTTTGAAATATGAAGCCCTCATTGTTGGCTCCAATGCGGAGAAAAATTCAGAACAGTCAAAATTGCGCCGATGGTTCCGTAGACAGATAAAGCAAAGTGATAATTCAAGCAAAGAGATCTTGGAAGTTTCAGAAGGCAATAAATTAAATGTATGCAGATACATGGATGAGATTCTTGTTTTGGTTTCAGGTTCTAGAGATGATGCAGTGAGTTTGAAGTCTGACATACTAAACTTCTTGAGTGGCTCACTTCATTTAGATGTTGAAAGTCAGATGAATCCATTGGCTGTTGATAGCAACTCTCATCATTCTTTGCAATTTCTTGGCACAACTATTGGAGTTAGAACAAGAGAAGCCAAAACCTTACGGGCTGTGCACAAATTAAGGGATAAAGTGCAGATGTTTGCTTCTCAGAAGCAGGAAATTTGGGATTCTTTTACTCTCAGAATTGGTAAAAAATGGCTGGGATGGGGTCTGAGAAGGCTGAAAGAGTCTGAGATCAAATCTCTGGGGCTGAGCACTCCTACTTTGGATCACTTATCTCAGTTTCGTAAGCCGGGAATGAAAACCGATCATTGGTTTGGGTTGCTGATGAAGATATGGATGCAAGATGTGAATGCCAAGACTGAAGCTGATGTAAAAACCATCCTATCCAAGCACATTATTGAACCGGCATTGCCTCAAGATCTGAGGGAGTCTTTCTATAACTTCAGAAAACACGCAATGGACTATGTTTCATCAGAATCAGCATCTACTTTTGAATTGCTTAAGAGCTCTTTGGCCGAAGCCAGATCTGAACAGCAAAGTAATAAAAAAGTAGTTGCTTTAGAGGCACCAACTAGTTGCATAAAGAGAAGCCTGCTTTGGTATGGTGTGGTAGGCCGTCGAGGTTACCCAAAGCATGTTTCTTCATTAGTGTTACAAGATGATGAGCTAATAATAAGTTGGTTCTCTGGTTTGATTCAGAGATGGGTAAAATGGTACTCTGAATTTGAAAATTTTGGCTACATAAAGCTTTTAATGGTTCAGTGTGTCAGGAAATCCTGTACCAGGACGCTTGGAGCCAAGTATCAAGTGCCCGAAGAGCTGATAGAGAAAAAGTATGACTCAGAATTGAGCAGCATTCCCATGGTAGATGAGTTGGCAGTTGAAATTGAATCACCCCCGTATGACACTTCTATTAGTTTTGATAATAATGAATCTCTTAATTATGGAACCTGTAATAATGGATTGTGCTTATTGTCATTATCAACGATTGAAGTATCAAATAGGGTGTTCAACTGCTTTGTATTTGGATGCACTGCTGCATCACCGAGCATGTATAATCTCTACGTGAAAGGGAAGCAAAAGTTTCCCGGTTGTAAGACAGGATTCTCTTTATCCGTTCATCCAAGCTTGAATCGAAGACGGATTGGATTGTGCAAAGAACATGTTAAAGCTTTGTATCTTGGACAGATCTCGCTTCAGTCTGTAGAATTTGAGGCATTGAGGAAATGA

Network for GWHGAAEX017985

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00078.26	RVT_1	139	365	1.50E-10
PF01348.20	Intron_maturas2	559	643	0.00024

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006397	Biological Process	mRNA processing

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	11.070
SRP064423	SRR2545915	Juvenile tuber	5.650
SRP108465	SRR5643513	five period of Gastrodia elata	7.980
	SRR5643514	five period of Gastrodia elata	10.350
	SRR5643515	five period of Gastrodia elata	8.490
	SRR5643524	five period of Gastrodia elata	9.460
	SRR5643525	five period of Gastrodia elata	11.150
	SRR5643528	five period of Gastrodia elata	7.880
	SRR5643658	five period of Gastrodia elata	6.000
	SRR5643659	five period of Gastrodia elata	6.560
	SRR5643660	five period of Gastrodia elata	5.290
	SRR5643661	five period of Gastrodia elata	6.200
	SRR5643662	five period of Gastrodia elata	5.590
	SRR5643663	five period of Gastrodia elata	6.180
	SRR5643664	five period of Gastrodia elata	5.670
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	8.990
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	6.090
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	9.220
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	8.630
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	8.740
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	8.160
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	9.610
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	8.480
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	8.360
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	11.120
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	8.450
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	8.450
SRP279888	Gastro	Gastrodia elata tuber	8.75
	Juven	Juvenile tuber	8.80
	Mother_Gastro	Mother tuber of Gastrodia elata	10.31
	Mother_Juven	Mother tuber of Juvenile	11.33