Gene detail

Detail information of GWHGAAEX017989/evm.TU.scaffold_89.61

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG2779	N-myristoyl transferase
nr	gi\|720081410\|ref\|XP_010242274.1\|	PREDICTED: glycylpeptide N-tetradecanoyltransferase 1-like [Nelumbo nucifera]
Swissprot	tr\|Q9LTR9\|NMT1_ARATH	Glycylpeptide N-tetradecanoyltransferase 1
trEMBL	tr\|A0A067KX98\|A0A067KX98_JATCU	Glycylpeptide N-tetradecanoyltransferase {ECO:0000256\|RuleBase:RU000586}
TAIR	AT5G57020	myristoyl-CoA:protein N-myristoyltransferase

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000090	2829573	2831320	-

Transcript Sequence
>GWHTAAEX017989 GTCCATAGGCTAACTAGAACTGACATCTCTCCCCATTCTCCTCTGTTTTCTTCTCAGATCGCAAATGGCACACGGCGGCGAATCCTCCTCAGGCTCATCAGGCGAGGAACGTAACGCGGTATCTCCCGTCTCCAACCCTTCGCCGGCTGCAGCCGTTGATTCGCCGTCGATTGATGCAATTTCCCACAAAATCCAAGAATCACTCTCCTTGACCAAGCAGCATCGGTTCTGGGAAACCCAGCCCGTCGGCCAATTCAAGGATCTGGGAAATTCCTCCGTTCCCGAAGGACCAATCGAGCAGGCTACCCCCGTTTCGGAAGTAAAGAAGGAGCCATACAATCTCCCGTCCCTTTACGAATGGACGACCTGCGACATCGATGACGACGCCATAGCCACCGAGATCTATAACCTACTCACATGCAATTACGTGGAGGATGACGAGAACATGTTCCGGTTCAACTACTCCAAAGAGTTCCTCCGCTGGGCTCTCCGCCCTCCGGGATACTTCAAATCATGGCATATTGGTGTGCGCGTCAAAGCCAACAAAAAGCTCGTTGCTTTCATCACTGGCGTCCCCGCCAGAATTCGCGTCCGCGAAGATGTGATTTTGATGGCTGAGGTCAACTTCCTCTGCGTTCATAAGAGGCTGAGGTCGAAGCGCCTCGCCCCTGTGCTCATCAAAGAAATTACGCGAAGAATCCATTTGGAGAATATTTGGCAGGCCGCTTATACTGCCGGAGTTGTCCTTCCTACTCCGATTGCAACTTGTCAGTACTGGCATCGATCTCTGAATCCCAAGAAGCTCATTGATGTTGGGTTCTCTAGGCTTGGGGCAAGGATGACCATGAGCCGCACTATTAGACTTTTCAAGCTGTCGGCATTGCCTATTACCCTTGGATTCAGAAAGATGGAGCTGCGTGATGTTCCGGCTGTGACTAGACTACTGAGGGAGTATTTGTCTCGATTTGTCGTGGCGCCTAGTTTTGATGAGATGGATGTGGAGCACTGGATTCTTCCAAGGGAGGATGTGGTGGATAGTTACGTGGTAGAGAGCCCTGAGAATCATGAGATTACTGACTTTTGTAGTTTCTACACTCTGCCATCTTCCATTCTTAACAATCCGAACTATTCAACTTTGAAGGCTGCTTACTCTTTCTATAATGTGGCAACAAAGACTCCTTTGCTTCAACTAATGAATGATGCGCTTATAGTGGCCAAGCAGAAGGATTATGATGTGTTCAATGCGTTGGATGTCATGGAGAATGAGTCGTTTCTCAAGGATCTGAAGTTTGGGCCAGGAGATGGAATGCTGCATTATTATTTGTATAACTATCGGCTTAGGTATGCTTTAAAACCTTCAGAGCTCGGGCTAGTCCTCTTATAGTTTCTGATAATTGTGATTCAAGTTTTGAAGGTATGGTTTTAGCTTCATTTAAAATCTTGTGATTTCTCTTACTGGGTCATTGGCCGGTCATATGTCTTGTGAAGGATTGAGTCTTTTATTGGGGGAAATGATTGTTTAAAGAGGCACGCCCTATCTCTTTACTGAATTTTATTATATGTTTGGCCAGATTGATGTATGAAATGTAGCGGTCCTTGGAATTTGTTTTCTTAGATTCTTTCTACTTTTTGCTTGAATTTGGTAGTATTGAATAAATCGATACAAGGAGTGTGATATAACTTTGGAATCCATGTTTTGCCATTGATTATCTACTTGTTTGATCACAATTTGCATTGGATTTAATCTG

Network for GWHGAAEX017989

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01233.18	NMT	76	235	7.50E-77
PF02799.14	NMT_C	249	426	3.10E-76

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006499	Biological Process	N-terminal protein myristoylation
GO:0004379	Molecular Function	glycylpeptide N-tetradecanoyltransferase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	26.200
SRP064423	SRR2545915	Juvenile tuber	26.170
SRP108465	SRR5643513	five period of Gastrodia elata	31.670
	SRR5643514	five period of Gastrodia elata	24.910
	SRR5643515	five period of Gastrodia elata	28.500
	SRR5643524	five period of Gastrodia elata	22.740
	SRR5643525	five period of Gastrodia elata	38.480
	SRR5643528	five period of Gastrodia elata	38.850
	SRR5643658	five period of Gastrodia elata	34.020
	SRR5643659	five period of Gastrodia elata	39.480
	SRR5643660	five period of Gastrodia elata	38.620
	SRR5643661	five period of Gastrodia elata	39.270
	SRR5643662	five period of Gastrodia elata	40.890
	SRR5643663	five period of Gastrodia elata	39.740
	SRR5643664	five period of Gastrodia elata	33.010
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	37.530
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	42.890
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	39.690
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	34.590
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	29.270
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	32.500
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	39.320
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	35.180
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	39.000
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	38.510
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	45.170
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	45.170
SRP279888	Gastro	Gastrodia elata tuber	40.33
	Juven	Juvenile tuber	43.06
	Mother_Gastro	Mother tuber of Gastrodia elata	22.54
	Mother_Juven	Mother tuber of Juvenile	23.60