Gene detail

Detail information of GWHGAAEX017990/evm.TU.scaffold_89.63

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|29348489\|ref\|NP_811992.1\|	1.00E-108	cysteine synthase A [Bacteroides thetaiotaomicron VPI-5482]
KOG	KOG1252	4.00E-105	Cystathionine beta-synthase and related enzymes
nr	gi\|695004340\|ref\|XP_009388576.1\|	1.71E-172	PREDICTED: cysteine synthase-like [Musa acuminata subsp. malaccensis]
Swissprot	tr\|P32260\|CYSKP_SPIOL	4.00E-108	Cysteine synthase, chloroplastic/chromoplastic (Precursor)
trEMBL	tr\|M0S8K5\|M0S8K5_MUSAM	6.00E-173	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr2P16640_001}
TAIR	AT2G43750	4.00E-105	O-acetylserine (thiol) lyase B

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000090	2834287	2842846	+

Transcript Sequence
>GWHTAAEX017990 TTCTGAAAAGTTTTTGACTAAAAAATTTTAATATAACAATCTATATATATGTTCACTCGTATTTCTTCTACAAATTATGAGAGAATATTTGAATTAAAGAGAAAAAATACAAATGCATAAAAACAATCCATTTCACCTTCAGCATCAGCTCCGAGGCGATGGAATCTATATAATGCATCAGTGTTGAGAGAGGAACTTGAAGGAAGGAAGGAAGCAGACATGTCGCAGAGAAGAGGCCTCCCTGCGCTCATATCCTCTTCAAGTGAAGAAGGAAATGAGGAGAGGATTGCCTCTAACATTATCGATCTTATGGGGTGGACGCCATTGGTGGAACTGAAAAGAATTACAAAGAAAGAACAACTGAATGTGCGGTTAGTTGCCAAACTAGAGTCTTATCAACCTCTAAACACTGTGAAGGATCGCGCAGCACTCAGAATGCTAGAAGATGCTGAAGAGAAGGGCATTCTTAAACCAGGCATATCCACAATAGTAGGGCTTACAAGCGGAAATTTAGGCGTTTCTTTGGCATTTGTAGCCCTACTGAAAGGCTACAAGTTCATCGCTATAATGCCACAAAATTACTCGCTTGAGAAACGAATGCTACAAAAATTTTTGGGAGCCGAAATCATATTAATGGATTATTCAGAAGGATTAAAAGGAGTTTATGATAGGCTGGACCTGATCAAAGAGAAGATACCTGATGCATACTTTATTGATCAAACAAGTAATCCAGCAAATCCAGAGGCACATTTTATGACCACCGGTCCAGAAATATGGAATGATACAGCAGGCAAAGTGGACATTGTTGTATGTGGTTCTGGGTCTGCTGGGACAATTACTGGAGTTGGGAGGTTTCTCAAGATGAAAAATCAAGCTATTAAAATCATTTGTGTTGAACCAACTGAGAGTGCTGTCATTTCAGGAGGTGAACCTGGGAATCACAACATTCAGGGTATTGGACCAGGATTTGTTCCCGAAAATTTGGATAGATCAGTGATAGATGAAATAATCACTGTAAGCACAGAGGAATCCATTATACATACTCGAAGGCTTGCCTTGGAGGAAGGATTGATCATGGGTATATCCTCAGGAGCCTGCTTAGTGGCTTGCTTAAAGGTTGCAAAGAGAGAAGAAAATAAAGGCAAAATGATTGTTACTATTTTCCCCAGTGGTGGTGAAAGGTATTTGAGCACTGAGTTATTTGCTCAAGTGAGGGAAGAATGCATCAATATGAGCATTGAATTTCCAACAAATATAATATGATTGCAACTGATGTTTTAGGGTTTTTTTATTGTTTTAAGTTCCAATAATTATAAATAAACCTCCTAAATGATATTTGATTGAAATAATTTGTTTTAATTGAATGTACTTCTTTCAATATGAAAAAAAATTATTGTTATTTTTGAAGTGTTTCCTTCGAGAAAGTTGAATTTGTATGAGCCTATATTATTAATAATCAATTATAATGTAATGATACAAATTATAGATTTCACTACAGTTTCTTTTTAATTTTACCAGCTGACAAATTACACTAGTAATAAATGCCAAGACATTGTGAAGCTTTATTTCCATTGTGCTCGGTCAAATAAC

Network for GWHGAAEX017990

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module2

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00291.24	PALP	31	315	2.60E-58

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01738	cysK	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Biosynthesis of antibiotics	map01130
		Carbon metabolism	map01200
		Biosynthesis of amino acids	map01230
		Sulfur metabolism	map00920
		Cysteine and methionine metabolism	map00270

Gene Ontology

GO term	Ontology	Name
GO:0006535	Biological Process	cysteine biosynthetic process from serine
GO:0004124	Molecular Function	cysteine synthase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	77.480
SRP064423	SRR2545915	Juvenile tuber	36.010
SRP108465	SRR5643513	five period of Gastrodia elata	65.120
	SRR5643514	five period of Gastrodia elata	44.660
	SRR5643515	five period of Gastrodia elata	40.620
	SRR5643524	five period of Gastrodia elata	43.870
	SRR5643525	five period of Gastrodia elata	32.290
	SRR5643528	five period of Gastrodia elata	31.050
	SRR5643658	five period of Gastrodia elata	36.800
	SRR5643659	five period of Gastrodia elata	22.030
	SRR5643660	five period of Gastrodia elata	20.560
	SRR5643661	five period of Gastrodia elata	18.440
	SRR5643662	five period of Gastrodia elata	14.890
	SRR5643663	five period of Gastrodia elata	18.530
	SRR5643664	five period of Gastrodia elata	13.120
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	60.010
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	65.530
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	69.340
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	62.480
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	97.030
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	100.570
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	85.120
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	89.280
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	90.300
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	118.940
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	101.530
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	101.530
SRP279888	Gastro	Gastrodia elata tuber	19.51
	Juven	Juvenile tuber	26.62
	Mother_Gastro	Mother tuber of Gastrodia elata	40.15
	Mother_Juven	Mother tuber of Juvenile	22.90