Gene detail

Detail information of GWHGAAEX017991/evm.TU.scaffold_89.64

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|108760510\|ref\|YP_632759.1\|	2.00E-21	serine/threonine-protein kinase PKN1 [Myxococcus xanthus DK 1622]
KOG	KOG1164	0	Casein kinase (serine/threonine/tyrosine protein kinase)
nr	gi\|743799414\|ref\|XP_010925469.1\|	0	PREDICTED: casein kinase I isoform delta-like isoform X2 [Elaeis guineensis]
Swissprot	tr\|P42158\|KC1D_ARATH	0	Casein kinase I isoform delta-like
trEMBL	tr\|A0A067L8E7\|A0A067L8E7_JATCU	0	Uncharacterized protein {ECO:0000313\|EMBL:KDP40745.1}
TAIR	AT1G72710	0	casein kinase 1-like protein 2

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000090	2843308	2875231	-

Transcript Sequence
>GWHTAAEX017991 AAATTATTGTGCAAGTGCTGAACTCGAATTGTTTTGATTCTGGTAACCTTTTCACCTTCCACGGCAAGGCGTCGAACGAGTCGTGCTCATTTCCCTTATCTTCATGCATCTGATTCAAGCCAAACCTTAGCTCGGGCAGAAAGAACAAAATTTTTGTGTAAATTTATGTTTAATCTTGTAATTGCGCTGGCTTGGGATGCGAATTCCGGTGATCGTGTCTTTAGCCCATAGGTTTGTATGCGAACAGAGAAGTGTAGAGCATTCATGGCGAAATAGGAGTCTTTCTTTTAGGTTAAGGTTTGAATTTGAGGAAAAGTTCGTATTTTGATGGAGCCTCTTGTGGTCAACAAATATCGTCTCGGTCGCAAGATTGGAAGTGGGTCCTTTGGGGAGATCTACTTGGGCACCAATGTACAGACTAATGAGGAGGTCGCCATTAAATTGGAAAATGTTAATACTAAGCACCCTCAATTGCTGTATGAGTCAAAGCTCTACAAGTACTTGCAAGGAGGAACTGGTGTTCCAAATATAAGATGGTTTGGCGTAGAAGATGAATACAATGTGCTTGTGATGGACTTATTGGGACCAAACCTTGAAGATCTTTTTAATTTTTGCAGTAGAAAGCTTTCATTGAAATCTGTTCTTATGCTAGCTGATCAGATGATGAATCGTGTGGAGTATGTTCATGAAAAATCTTTTCTGCATCGGGATATAAAGCCTGATAATTTTCTTATGGGTTTGGGAAGACGTGCAAATCAGGTGTACATTCTTGATTTTGGCCTTGCCAAAAGGTACAGAGATGCTTCAACTCATCAGCATATTCCATACAGAGAAAACAAGAACTTGACTGGGACAGCAAGGTATGCGAGCATGTATGCACATCTTGGCGTTGAGCAATGCAGGAGGGATGATCTGGAATCTCTTGGATTTGTGCTGATGTATTTTTTAAGAGGGAGTCTTCCTTGGCAGGGACTAAAAGCAGCAACTAAAAAACAGAAGTATCAAAAAATTTGTGAGAAAAAAGTCGCCACATCAATTGAGGTCTTATGCAGAGGCTATCCCACCGAATTCCCATCATATTTTCACTATTGCCGCTCACTAAGATTTGATGATAAACCTGATTATGCTTATCTCAAGAAACTATTTCGTGATCTTTTCATTCGTGAAGGCTTTCAATTTGATTATGTTTTTGATTGGACCATTTTAAAGTACCAGCAGTCTCAATCTGCGACTGCTTCTCCTCGTGCTCTTGGATTTGGTGCTGGACCCAGCACTGGCTTGACCCCCGTTGTCCCTATCGCTGAGAAGCAAACAGGTGAAGAAGAAAGGACGAGTGGTTGCTTTGTGAAGGACCCATCCTGCCGACAGTTTTCAGGGCTTGTTACATCATCAGGTAGCATGACCAAGTCGAAAAATCCAGTAGGAAATGACTTGTCAGCGAAAAATGATTTACAGAGCTCAGCTTTGTTGGGGCAGTCAGGCGGCTCTTTGAGGCCTGCTGCTGTTTCTAGCGTGTTGCTGTCCGAGGCAGAACTTTCTTGCGCTCTCCATGGGCCGCACGACGCCAATAACAAGAGCTCCTACGAACCGGCTCTCAAAGGAATGGAGCGACTTGATCTTCTCGGTGGAGCCAAGTAGAATGATTGCACGCTCCCTTCTCTGTACAATGCTTGTGGGGGATCTATTCTGTTAATTCGTACAGTACCCATGAGAAAGAAATGAAGATGGCACAGAATAAATGAAGATTTTGTCAGTGCTTTGCCCAGCCCCATGGCTGTTCTTGCTTCTCTACTTGATTTATTTTGAGGCTGTATTTGCTGTTCCAGAAAGTCTGTATTGCCTTTGTCGTTGACATCTCTGTTTGCAATTTGAGACTTGGAAGAGTTGTCGATTTGATGAGAATAATGATGGTGCGGAAATAACAGTCAAATTTAATATTAATTTGTAATTTTATGGTTCAATTTATTGTATAAGGCAAGGAAGGAACATGCCTTGGGATTAAATCTGTTGCAGTGAATTCAAAAGCTGTGTTGTAATGCTTGTTGTTAGTTGTCTTTCTAAGATGTGGTTGATGAAGCTCAAAAAATTATAGTTTTGTTGTGGAAACTAGATTTCTAAGAAAACGTTAATTGGAATAGTATTTCAT

Network for GWHGAAEX017991

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.24	Pkinase	9	227	7.20E-27

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	CK1_CK1

KEGG pathway

KO	Enzyme	pathway	mapID
K02218	CSNK1, CKI	MAPK signaling pathway - yeast	map04011
K02218	CSNK1, CKI	Hippo signaling pathway - multiple species	map04392

Gene Ontology

GO term	Ontology	Name
GO:0006468	Biological Process	protein phosphorylation
GO:0005524	Molecular Function	ATP binding
GO:0004672	Molecular Function	protein kinase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	31.820
SRP064423	SRR2545915	Juvenile tuber	33.190
SRP108465	SRR5643513	five period of Gastrodia elata	25.520
	SRR5643514	five period of Gastrodia elata	28.400
	SRR5643515	five period of Gastrodia elata	26.920
	SRR5643524	five period of Gastrodia elata	27.130
	SRR5643525	five period of Gastrodia elata	38.600
	SRR5643528	five period of Gastrodia elata	31.670
	SRR5643658	five period of Gastrodia elata	34.260
	SRR5643659	five period of Gastrodia elata	27.580
	SRR5643660	five period of Gastrodia elata	28.850
	SRR5643661	five period of Gastrodia elata	27.130
	SRR5643662	five period of Gastrodia elata	32.790
	SRR5643663	five period of Gastrodia elata	32.990
	SRR5643664	five period of Gastrodia elata	33.280
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	24.330
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	23.610
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	18.650
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	24.700
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	22.990
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	23.400
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	18.430
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	19.900
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	14.640
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	15.770
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	22.880
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	22.880
SRP279888	Gastro	Gastrodia elata tuber	43.77
	Juven	Juvenile tuber	23.15
	Mother_Gastro	Mother tuber of Gastrodia elata	71.94
	Mother_Juven	Mother tuber of Juvenile	43.77